BAC Information

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BAC

Clone NameMSMg01-430M10
Chromosome3 (Build37)
Map Location 63,225,466 - 63,225,813
singlet/doubletsinglet
Overlap genenone
Upstream gene4631416L12Rik, Dhx36, Gpr149, LOC676984, LOC666967, Mme
Downstream genePlch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, 4930518C23Rik, LOC380739, EG637004, EG667031, EG637053
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430M10.T7 (MSMg01no430_m10.b1)MSMg01-430M10.TJ (MSMg01no430_m10.g1)
ACCAG523189AG523190
length815793
length of high quality
(start - end)
246 (77 - 322)350 (83 - 432)
definitionCHROMAT_FILE: MSMg01no430_m10.b1 PHD_FILE: MSMg01no430_m10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:47 2005CHROMAT_FILE: MSMg01no430_m10.g1 PHD_FILE: MSMg01no430_m10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGC
CGCGGAATTCCTTGGTTAGCATAAGACTACTAGATTTTCCCCAGGTAGTG
GGTATAGGGGTTCAGGCTCCCAGACAAGGTCAGAGAAGGGGAAGCCCTGC
TGGTAAAGGGAGTCATCCATTTTGCTCCAAGCTCAGAGAATCTATCTGGT
CATGGTAAACTTGGACCTTAATTAGAAGGGTTTCCCCACACCAGGTCATT
TTCTACTTGGAAACAAAGCTTATCTGTTTAAATTCCATCCAATTTAAATA
CTCGAAGTGTTGAACTATAGTTTTTTTTTTCCAGACTAGTTTTCTCTTCT
GCAAGTCCCAAAGGGACTTACTTCTGCCACTTTGTGGATTGATTGCCTTG
CGGCTGTTTGTATTTTAATGCTAATTCTGCTTCCTGAAAAGGGGCTGTTC
CTGACCTCATACTCTTTTGTAATTTACAGGCGTTCTCTGCTTGCCTTTTA
TTATCTCCATTCCGTTCATATTTTCCTTATTTATTCCTCTATTTTTTTTC
CCTCTTCCTTTGCTATTGCTCCATTTATCTTCTCTCCCTTTTCTCCCTTT
TTTTTTTCTCTTTTTCTTCCCTTTATCATTTTCGTAGCCCCTTTTCTCTT
TTTTTTCTTTTTCTTCTCTCCTTCCTTTATCTCTTTTCCTCTTATCCTAC
CCTTATTCCCTACTCATACCGCTCCATTCCTGTCCTATGTTCCCACTTTG
CACCATTATTCTACAATCCTTTATTCACATTCTTTATATTCTCCTCTTCT
CCCTCTTCTCCTTAG
NGGCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGAAGTGTTTATGCCG
ACTGAAGGAAAAACTTACCAATTTCTGCTAATGCATGGGTTACTCAGCAG
TGGATTAGCTGGTATGTGAGTCTGTTGCAAGTGGACTGCAGATGAGGGAT
TAGATCTCAATGTGGCTTAGACCCCTAAAGTTGGGGAGTAGGCAGGCACC
AAGATATCCTACTGAGTCTTGGCAGCAATATTAGGGTTTTGCAGCAAAGT
ACCTTGGTGGATTGCTCAGGACCGATTTTTGTTCCAAAGATCACACATCA
GATCTCATATAAGAGATTTATTGGGAGGGGCAAAAAAAAGGCATCCTGGA
CTGGGGACAAGAGAGAGACAGAGAAACTGAAAGTGATAGAGCATGAGAGA
GGGCTGTGATGGCGGGAACATTTTATAGTGTACGCACTGTCTCATTTTGT
GGTTGGGTGATCACCTGATTCTTTCATCCCTTTTACTCTATTTCTTTCCC
TTTCATCCTCTTCAATATCCTCCCCCTTTACTTTTCCTATCTCCCTTATT
CCTCACCTTGTTATCCCCCCTCTTTCTCTCCCCTCTTTTTACTTCCCTCT
CTCCTTCCTTCCCCTTCCCCCCCCTTTTTTTTTCTGTACTCCCCATCCGT
TCTTTCTGTTTACTCATCCCTAAGCTTCTTATGTTCCTAATCCCTTTTAT
CCCAATTTTACCCCCCTGTCCAACTCTTATCCCCCTCCTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_m10.g1 MSMg01no430_m10.g1 CHROMAT_FILE:
MSMg01no430_m10.g1 PHD_FILE: MSMg01no430_m10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:48 2005
         (350 letters)



>mm_chr3_63225064_63225813
          Length = 750

 Score =  634 bits (328), Expect = 0.0
 Identities = 343/352 (97%), Gaps = 8/352 (2%)
 Strand = Plus / Minus

                                                                       
Query: 3   ggaagtgtttatgccgactgaaggaaaaacttaccaatttctgctaatgcatgggttact 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 ggaagtgtttatgccgactgaaggaaaaacttaccaatttctgctaatgcatgggttact 691

                                                                       
Query: 63  cagcagtggattagctggtatgtgagtctgttgcaagtggactgcagatgagggattaga 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 cagcagtggattagctggtatgtgagtctgttgcaagtggactgcagatgagggattaga 631

                                                                       
Query: 123 tctcaatgtggcttagacccctaaagttggggagtaggcaggcaccaagatatcctactg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tctcaatgtggcttagacccctaaagttggggagtaggcaggcaccaagatatcctactg 571

                                                                       
Query: 183 agtcttggcagcaatattagggttttgcagcaaagtaccttggtggattgctcaggaccg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 agtcttggcagcaatattagggttttgcagcaaagtaccttggtggattgctcaggaccg 511

                                                                       
Query: 243 a----tttttgttccaaagatcacacatcagatctcatataagagatttattgggagggg 298
           |        || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aagag----tgctccaaagatcacacatcagatctcatataagagatttattgggagggg 455

                                                               
Query: 299 caaaaaaaaggcatcctggactggggacaagagagagacagagaaactgaaa 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 caaaaaaaaggcatcctggactggggacaagagagagacagagaaactgaaa 403


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space:   252681
Effective search space used:   252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)