BAC Information

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BAC

Clone NameMSMg01-431K13
Chromosome3 (Build37)
Map Location 77,707,550 - 77,707,871
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041625, LOC100041635, Dnmt3a-ps1
Downstream geneEG626461, LOC667526, LOC626479, LOC100041691, LOC383883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431K13.T7 (MSMg01no431_k13.b1)MSMg01-431K13.TJ (MSMg01no431_k13.g1)
ACCAG523866AG523867
length732752
length of high quality
(start - end)		322 (321 - 642)462 (68 - 529)
definitionCHROMAT_FILE: MSMg01no431_k13.b1 PHD_FILE: MSMg01no431_k13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:04 2005CHROMAT_FILE: MSMg01no431_k13.g1 PHD_FILE: MSMg01no431_k13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCGCGGAATTCACT
ATGTGTTTCCATTAATGTTTACTATAAAATAGGGTCTTCATTCATAAGCT
GAGAACAGTGAACCAGGGATATAGGTAATACAGAGGTATATTGGGAAGAA
CTGATAAGATAATGAATAGGGCTATAAAAACATGAGAAAGCAAGGATTGG
AGAAATAGAAATCATTGCCATGTATATAATGTTGACATTAATCTCATTAA
TCTGAAATGAGACTTATCTCAGGGATTAGATAATAGTAGCTATTGGGTTA
ATAACGGGGATTATCGTTTACAGACAGCCCTTTCCAAAAAGTCTGCCTCT
AACCAGCTGACCAAAGCAGACTTCACATGTCTAGGTATTATTGCAGAATG
ATTTCTGGAGGAAGATGTGGTGAGGTACAGTCCTACTGCAGCCTATGGAG
CCATTATTACCATTTGCATACAATGGAGTTGATGCATGATGGTGTCATAA
AACCACATCATTCTATCTAGTGCTCTGTATATTGTGCAGTTTTACACACG
TACTCAAATTCTTAAAATCTAAATCCATGTAGAAATTATTCTTACATCAT
TTGTGTTTTAAATATATTTATGTCAGACAATGTTCTTGTGTCAATAATGT
TTTCCAAGGTTTTGCTTTATTCATGATACTTANAATTGTGTGATGATAAT
ATTTCAAGTGCTTATTAATTCTTTAAAAACTN

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGCACTAAACCCATCTGGTTCTGGACTTTTTTT
GGTTGGGAGACTATTAATGACTGCTTCTATTTCTTTAGGGGAAATGGGAC
TGTTAAGATCGTTAATCTGATCCTGATTTAACTTTCATACATGGAATCTG
TCTAGGAAGTTGTCCCTTTCATCCAGGTTTTCCAGTTTTTTTTGAGTAGT
CTTTTGTTGTAGGATCTGATGATGTCTTGGATTTCCTCAGGATCTGTTGT
TATGTCTCCTTTTTCATTTCTGATTTTGTTAATTAGGATACTGTCCCTGT
GCCTTCTAGTTAGTCTGGCTAGGGGATTTTCTATCTTGTTGATTTTCTCA
AAGAACCAGCTTCGGGTTTGGTTGATTCTTTGAATAATTTTTGTTTGTTT
GTTTGTTTCCACTTGCTTGATTTCAGCTCTATGTTTTATTGTTTCCTGCC
TTCTACTCCTCTTGAGTGAATTTGCTTCTTTAATTCTAGAGCTTCTAGAT
GTGCTGTCAGACTGCTAGTGTACGCTCTCTCTAGTTTCTTTTGGAGGCCT
CCGGGCTATGAATTTTCCTCTTATTAATGCTTATTGGGGCCCCTAATTTG
GGTTGTTTTGGGCTCCTTTTCTTTAAATCCCAAAAGGCTTTAATTTTCTT
CTCTTTTTTCTCCCTACCCCCGTTTCCTTCTTCTAAGTGTGTCTTCCTTT
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_k13.b1 MSMg01no431_k13.b1 CHROMAT_FILE:
MSMg01no431_k13.b1 PHD_FILE: MSMg01no431_k13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:04 2005
         (322 letters)



>mm_chr3_77707350_77708071
          Length = 722

 Score =  615 bits (318), Expect = e-180
 Identities = 321/322 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagacagccctttccaaaaagtctgcctctaaccagctgaccaaagcagacttcacatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 cagacagccctttccaaaaagtctgcctctaaccagctgaccaaagcagacttcacatgt 463

                                                                       
Query: 61  ctaggtattattgcagaatgatttctggaggaagatgtggtgaggtacagtcctactgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ctaggtattattgcagaatgatttctggaggaagatgtggtgaggtacagtcctactgca 403

                                                                       
Query: 121 gcctatggagccattattaccatttgcatacaatggagttgatgcatgatggtgtcataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gcctatggagccattattaccatttgcatacaatggagttgatgcatgatggtgtcataa 343

                                                                       
Query: 181 aaccacatcattctatctagtgctctgtatattgtgcagttttacacacgtactcaaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aaccacatcattctatctagtgctctgtatattgtgcagttttacacacgtactcaaatt 283

                                                                       
Query: 241 cttaaaatctaaatccatgtagaaattattcttacatcatttgtgttttaaatatattta 300
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 282 cttaaaatctaaatccatgtagaaattattctcacatcatttgtgttttaaatatattta 223

                                 
Query: 301 tgtcagacaatgttcttgtgtc 322
           ||||||||||||||||||||||
Sbjct: 222 tgtcagacaatgttcttgtgtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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