Query= MSMg01no431_p23.b1 MSMg01no431_p23.b1 CHROMAT_FILE:
MSMg01no431_p23.b1 PHD_FILE: MSMg01no431_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:33 2005
(278 letters)
>mm_chr3_51905015_51905693
Length = 679
Score = 507 bits (262), Expect = e-148
Identities = 272/276 (98%), Gaps = 3/276 (1%)
Strand = Plus / Plus
Query: 5 gaattcattgaga--tttcctagctgttgtcttcatctattcaaataagcattatatttt 62
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattgagaaattta-tagctgttgtcttcatctattcaaataagcattatatttt 263
Query: 63 cattttgaagttaaccactgtcttgggcgagctccctcctaggaattctcagaatacagg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cattttgaagttaaccactgtcttgggcgagctccctcctaggaattctcagaatacagg 323
Query: 123 ctggctgtacctgcgggtgtcttagcacagaggcgccccccacccctgtcttccttccac 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctggctgtacctgcgggtgtcttagcacagaggcgccccccacccctgtcttccttccac 383
Query: 183 aacctaaaggtggttaagggagtacagagcccagagaaaaaactttttggctcctgactc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aacctaaaggtggttaagggagtacagagcccagagaaaaaactttttggctcctgactc 443
Query: 243 tactccttttgccttcgaaccaggtctctaaaaaaa 278
||||||||||||||||||||||||||||||||||||
Sbjct: 444 tactccttttgccttcgaaccaggtctctaaaaaaa 479
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 679
Length adjustment: 9
Effective length of query: 269
Effective length of database: 670
Effective search space: 180230
Effective search space used: 180230
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no431_p23.g1 MSMg01no431_p23.g1 CHROMAT_FILE:
MSMg01no431_p23.g1 PHD_FILE: MSMg01no431_p23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:33 2005
(395 letters)
>mm_chr3_52085294_52086088
Length = 795
Score = 727 bits (376), Expect = 0.0
Identities = 390/395 (98%)
Strand = Plus / Minus
Query: 1 tgttgtagacaggacaccagcggtatcactctctacaaaggtaggtgtgtctttatccca 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 595 tgttgtagacaggacaccagcggtaccactctctacaaaggtaggtgtgtctttatccca 536
Query: 61 gcaattaaagaactcacctaaaaatggcaggcgtgcagggatctcggtagaaaatgtcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gcaattaaagaactcacctaaaaatggcaggcgtgcagggatctcggtagaaaatgtcct 476
Query: 121 cctccccctagctctacaagggacttccacctcccctccctgaggcaggtaatagcctat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 cctccccctagctctacaagggacttccacctcccctccctgaggcaggtaatagcctat 416
Query: 181 acttttttccattgcagatcacaatcaaggagacacaacttaaaggtcaaagatacctga 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 actttttcccattgcagatcacaatcaaggagacacaacttaaaggtcaaagatacctga 356
Query: 241 gggagctctctacttagagtgaaggaatgggtggggtacgggaacgggatgaaatccaga 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 355 gggagctctctacttagagtgaaggaatgggtggggtacgggaacaggatgaaatccaga 296
Query: 301 actgcactggaaataaaaacaaatactgattcaaaattttaaatcagcaggtccccccac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 actgcactggaaataaaaacaaatactgattcaaaattttaaatcagcaggtccccccac 236
Query: 361 cccattggnctggtataataaaccaccatgcaagt 395
|||||||| ||||| ||||||||||||||||||||
Sbjct: 235 cccattggcctggtgtaataaaccaccatgcaagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space: 303396
Effective search space used: 303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
