BAC Information

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BAC

Clone NameMSMg01-432G23
Chromosome3 (Build37)
Map Location 106,304,157 - 106,304,534
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnd3, Ddx20, 6530418L21Rik, Rap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d
Downstream geneCept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266, Kcna3, AI504432, Kcna2, Kcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432G23.T7 (MSMg01no432_g23.b1)MSMg01-432G23.TJ (MSMg01no432_g23.g1)
ACCAG524454AG524455
length786761
length of high quality
(start - end)
413 (49 - 461)378 (80 - 457)
definitionCHROMAT_FILE: MSMg01no432_g23.b1 PHD_FILE: MSMg01no432_g23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:09 2005CHROMAT_FILE: MSMg01no432_g23.g1 PHD_FILE: MSMg01no432_g23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCG
CGGAATTCTCTAAGGATACCTAAATAACTCGCTGAAAGAAATACAGGAAA
ACACAGGCAAACAGATAGAAGCCTATAAAGAGGAAACAAACTCCTTAAAG
AAATACAGGACCAGGCGGTGGTGGCACATGCCTTTAATCCCAGCACTTGG
GAGCCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCTAAAAA
GTGAGTTCCAGGACAGCCAGGGCTATGCAGAGAAACCCTATCTGGAAACA
AACAAATAAACAAACAAACATACAGGAAACCACAAACAGTTGAAGGAATT
GAACAAAGCAGTCCGAGACCTAACATTGGAAGTAGAAACAATAAAGAAAA
CACAAAAATACAGATACAAGCATCAACAACAGTATAGAAAAGATAGAATA
CAGAATCTCAGGCATACAAGATACCCTTAGAGATACTGACACAACGGTTC
AAGATAATTCAAAACATAAAATACTCCTAAACCTAAAATATTCAGGAAAC
CCCAGACAGTGGAAAGACATTAGAAAATAGGATAAGAAAAAAGTGAAGAT
ACCCGCTCCTAAAGCCCGAAAAAATTTTTCCCAAATCTTAAAGGAAAACT
CCCCCCCTTAATGGAAAAAAGGTTTTAGTGAAAAGGTTTTTTCAACCCTT
CAGAGGGACCTAATTTTCAGTGTCCCCCCCCCAATTCCTCCTAAAAAAAA
AAGAAAGGGAGCTCCCTCCTTTTTTTTCTATGATGG
NTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAGCAGAGACAGCTCCAGAA
GGGTGGCAGCTGGGGCCTAGGACTGTTTAATAGGAGAATTCCTGATCAAC
AGAAGTCCTTGCAGGCTATTACTCCAAGACTTCCATCAACAGGTCAGACT
GCCCATAACCTAGTCAGGGCCAGTCCTTTAACTTCAGTTTTGGTCATCTC
ATCAAGTGTTTATTAAGACTTTAGATCCATTCTCTAGCTAAAGGTCGAAC
AATCCCTGCACTGCCAGTTTTTCCCCATTATGGTATTTAGTAGTTTACCT
AGGCTTTCTTTTTTCTATACCTTTGTTTAAACCCTTCAAGAGATGGCCAA
CATCTTTAAAAGCATCTTCTCTTGAAGAATTCTTTTAAATGTTTTGCCTA
TCTTTTAATGTGGCCCTTACAAGTTTCAGAAATCCCAAGAATGCAGATGA
TATGGGGGTTGTAATAATGTTCCTAATGGAAGGTTCCTCTTTGTTTTGTA
GATACCATCTTTTTCTGCGTTTGGTTAATTTCCCCAGTTTCGGCCGGTTT
TCAATTTGTGTTTTTCGGTGTACTCTTTATGTCCTTCTTTGCCTCTTTAC
CTCTCTTTTTTTTCCCCCTTTCTCCTTTATCTTTCTTTTCTCTCCGTTTT
CCCCCCGTTCGTCTGATTTTATCTGGTTTACTCATGCTTCTTCAGGTCCT
TATTTGATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_g23.g1 MSMg01no432_g23.g1 CHROMAT_FILE:
MSMg01no432_g23.g1 PHD_FILE: MSMg01no432_g23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:09 2005
         (378 letters)



>mm_chr3_106303957_106304734
          Length = 778

 Score =  723 bits (374), Expect = 0.0
 Identities = 377/378 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagcagagacagctccagaagggtggcagctggggcctaggactgtttaataggagaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagcagagacagctccagaagggtggcagctggggcctaggactgtttaataggagaat 260

                                                                       
Query: 61  tcctgatcaacagaagtccttgcaggctattactccaagacttccatcaacaggtcagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctgatcaacagaagtccttgcaggctattactccaagacttccatcaacaggtcagac 320

                                                                       
Query: 121 tgcccataacctagtcagggccagtcctttaacttcagttttggtcatctcatcaagtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcccataacctagtcagggccagtcctttaacttcagttttggtcatctcatcaagtgt 380

                                                                       
Query: 181 ttattaagactttagatccattctctagctaaaggtcgaacaatccctgcactgccagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttattaagactttagatccattctctagctaaaggtcgaacaatccctgcactgccagtt 440

                                                                       
Query: 241 tttccccattatggtatttagtagtttacctaggctttcttttttctatacctttgttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttccccattatggtatttagtagtttacctaggctttcttttttctatacctttgttta 500

                                                                       
Query: 301 aacccttcaagagatggccaacatctttaaaagcatcttctcttgaagaattcttttaaa 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 aacccttcaagagatggccaacatctttaaaagcatcttctcttcaagaattcttttaaa 560

                             
Query: 361 tgttttgcctatctttta 378
           ||||||||||||||||||
Sbjct: 561 tgttttgcctatctttta 578


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)