BAC Information

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BAC

Clone NameMSMg01-432M11
Chromosome3 (Build37)
Map Location 122,970,874 - 122,971,280
singlet/doubletsinglet
Overlap geneSec24d
Upstream geneDnttip2, LOC675117, LOC100043726, Bcar3, Fnbp1l, Ppia-ps3_2252.1, Pde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2, Synpo2
Downstream geneG430022H21Rik, Prss12, EG668804, Ndst3, LOC100043333
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432M11.T7 (MSMg01no432_m11.b1)MSMg01-432M11.TJ (MSMg01no432_m11.g1)
ACCAG524716AG524717
length638791
length of high quality
(start - end)
105 (87 - 191)408 (68 - 475)
definitionCHROMAT_FILE: MSMg01no432_m11.b1 PHD_FILE: MSMg01no432_m11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:38 2005CHROMAT_FILE: MSMg01no432_m11.g1 PHD_FILE: MSMg01no432_m11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGGGAGCTGCCCNNCNTTCTAAATTTGCGGCGCTAAAGACTCACTATTT
CGAGAGGACCGCGGAATCTCCATCTTTTCCGACTGTCTGCATGTCCTCAT
GTTCCCCACCATGATGATGCTAACTAACCTCTGAAACTGTAAGCAAGCCC
ACAGTTAAGTGCTCTCTTTTAGAAAGTGACTAAGTAAGACGGGGCACACT
CCATGTCCCAACATGGAGGTCAAAGAAACTCGAAGAAGCCGTTTTCTCTT
GGAACAAATGAATTCCCAAGGGGAGCCCCAAAAAACAAACTCCGGGTCCT
CCAAAATTTTGAGGGGGCAAAAAAGGTTTTAACCCGGGGTTGTTTTTTCT
TCTGCGGGGGGGAGGGCCCCCCCTTTTTTGGGGGGGGAAAAAAAAATTAA
ATAAAGGGGTGCCCCCCCCCCCTGGGGAGGAAAAAAATTTCTTTCTTCTC
CCCCTCCTCTGGTTTGAGATGAAAATATGTACCATTTATATATATTTCTT
TATTAACTTTGTATTTTTTTTTNTTCTTTCTCTTCTNTCCTCTTTTCCTC
TCTCTGTCCTTTTCCATTTTATCCAATCATTCTCTCTATTCTTTTTTCTC
CTCTTCCTTTCTCTTTTTTATTTACTTTTTTTTTTCTT
GTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTCCCAGGACCAGGGAAGAGGGCTGGGCGGCTT
CCAGTCCCCTGCTGTGAGCATCGCTGTCCCGCTCCCCTTCCGCTGCTGCT
GCGTGGGTGCGCCGGTGCGGTCTTCTGAAGGCTCTGGGCTGCACGGGGCC
AAGCGACTGCCACGTCTCTCTAGGCGCAGTGGGAGGAGGGAAAGTGTTGT
CAGGAACACAGTGAACTAGAGACCTTTGTCTGCCTTTCTGTCCTCCGTTA
GCAAGACAGTGACCTCATCATACTCATGGTTGCTACTCGGAAGCTGAAGG
TTTAATATGAAAACAAAGCTAAATCGTGGATGTTAGTCTTCACGTTTGAA
ATTTGCATGCCATTTCCAGAATAAAGAGATCCCAGTCTTACTTAGAAGGT
ATTACTAATCTTTACCTTAAACCGCAGCAACGAGAAAGAAAGGAGAGGTA
CCCAAATGCTTGATGGAGAAACTGGAAAGAAACTAGAGAACCACGTTTTC
ACAACTAATATGGCTTTTGGACACTTTCTTTTCTAAATAAGAAAACTGAT
GTCCCTAGAAACTCCTGCTGTTACTGCGTTACCAAATTCTTCCTGGGTCT
AAACGAAACCTTTTTTAATTCTTTTTTCCGACTTTCAATAACCCTTTTCC
TCTTTTATAAAGAATCTTTTTTATCCTTCTACTAGGTTACATATTACATT
TAATTCCCCATTTCTGGTGTCTAAAAGAATCCCAACATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_m11.g1 MSMg01no432_m11.g1 CHROMAT_FILE:
MSMg01no432_m11.g1 PHD_FILE: MSMg01no432_m11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:38 2005
         (408 letters)



>mm_chr3_122970674_122971482
          Length = 809

 Score =  764 bits (395), Expect = 0.0
 Identities = 404/407 (99%), Gaps = 1/407 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcccaggaccagggaagagggctgggcggcttccagtcccctgctgtgagcatcgctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcccaggaccagggaagagggctgggcggcttccagtcccctgctgtgagcatcgctgt 260

                                                                       
Query: 61  cccgctccccttccgctgctgctgcgtgggtgcgccggtgcggtcttctgaaggctctgg 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccgctccccttccgcagctgctgcgtgggtgcgccggtgcggtcttctgaaggctctgg 320

                                                                       
Query: 121 gctgcacggggccaagcgactgccacgtctctctaggcgcagtgggaggagggaaagtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgcacggggccaagcgactgccacgtctctctaggcgcagtgggaggagggaaagtgt 380

                                                                       
Query: 181 tgtcaggaacacagtgaactagagacctttgtctgcctttctgtcctccgttagcaagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtcaggaacacagtgaactagagacctttgtctgcctttctgtcctccgttagcaagac 440

                                                                       
Query: 241 agtgacctcatcatactcatggttgctactcggaagctgaaggtttaatatgaaaacaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtgacctcatcatactcatggttgctactcggaagctgaaggtttaatatgaaaacaaa 500

                                                                       
Query: 301 gctaaatcgtggatgttagtcttcacgtttgaaatttgcatgccatttccagaataaaga 360
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctaaatcatggatgttagtcttcacgtttgaaatttgcatgccatttccagaataaaga 560

                                                          
Query: 361 gatccca-gtcttacttagaaggtattactaatctttaccttaaacc 406
           ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatcccacgtcttacttagaaggtattactaatctttaccttaaacc 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 809
Length adjustment: 9
Effective length of query: 399
Effective length of database: 800
Effective search space:   319200
Effective search space used:   319200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)