BAC Information

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BAC

Clone NameMSMg01-432M15
Chromosome3 (Build37)
Map Location 35,816,841 - 35,816,961
singlet/doubletsinglet
Overlap geneDcun1d1
Upstream geneLOC665655, Ube2l3-ps1, LOC625963, Atp11b, LOC665667
Downstream geneMccc1, BC050811, Acad9, D3Ertd254e, Gpr103, Anxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3, 4932438A13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432M15.T7 (MSMg01no432_m15.b1)MSMg01-432M15.TJ (MSMg01no432_m15.g1)
ACCAG524724AG524725
length764822
length of high quality
(start - end)
402 (44 - 445)122 (76 - 197)
definitionCHROMAT_FILE: MSMg01no432_m15.b1 PHD_FILE: MSMg01no432_m15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:39 2005CHROMAT_FILE: MSMg01no432_m15.g1 PHD_FILE: MSMg01no432_m15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTGTTTTTCTCTGTTCCCCATTTTTAAAATAGGGTTATTTGGTTCT
CAGAAACTTCTTGAGTTCTTTGTATATATTGTATATTAGCCCTCTATCAG
ATGTATGGTTGGTAAAGATCTTTTCCTAATCTGTTGGTTGCCGTTTTGTT
CTATTGACAAGTGTCCTTTGCATTATAGAAGCTTTGCAATTTTATGAGTT
TCTATTTGTAAATTCTTGATCTTAGAGCGTAAGCTATTGGTGTTCTGTTC
GGTGTTCTGTTCCGGAACTTTCTTCCATGCCCATGTGCTCGAGACACTTC
CCCGCCTTCTTTTCTATTTGTGTCTGTATATCTGGTTTATGTGGAGGTCC
TTGATCCACTTGGACTTGAGCTTTGTACAAGGAGATAAGACTGGGTTGAT
TTGCACTCTTTTACATGCTAACCCCAAGTTGAACACAGCACCATTTGTTG
CAAATGCTGTCTTTTTTTTCACTGGCTAGTTTTATCTCCTTCGCCCAAGA
TTAAGCGATCTTATTCTGGGAAGTTCCTTTCCTGTGCCTTTTTTTTTTTT
CCTTTGATTCACCCGGACCCCTTTTTTTCCTCTTTTTCTTCCTTATTTCT
TTACTCTTTTTTTCTTCTTTCCCTTTTTTTTTCCTTTCTCTTCTTCCTTT
TTTTTTTTTTTTTCTCACTCTCTTTTTTTTCCTTATTTTCCCCTTCCTTC
TTTTTCTCTTCCAG
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTCTCTGGGAAGAAACAGGGCTGC
AGGAGCAGGGTGCCTGCTCAGAAGCTGCTACTGTGGTGGATAAAACTGGT
TAGAAGGCAGGGGTAGGGGGATGGGGCATGGGGGCTATTGAAGGAGNNNT
CNGNNNTGNGNGNTNGNNNTGTGGTGTTTCGGTTTTCTATTTCTTTTCCC
TCTTTTGTCCGCCCCCTGTGTCGGGTTCTCCTTTCTCCCCTGCTCTTTCT
TCCCTGTCCCCCCTGCCGTTTTTTTTTTTTCCCCTGCTCCTGCCCCTCGC
CTTTCTCTTTCCTCCTCTTCTTTCCTGTCTTTGTTTTTTCGTTCTCTCTT
TTCTTTTGTTGCTTCCCCCCTCCTTTCTTTGTCTCTTTTCTTCTCCTTTC
CGCTTCTCTCCCGCTTTCCCTNTCCTTCCTCCCCTTTTCCTTCCTTTTTC
CCTCTTTCTCTTTTCTTTCTGTTTTTCCTCTCTTCTTTTCTTCTTTCCTC
TCGTTTTTCCTTCTCCTTCTTTCTCTTTTTTCTCTTCCCTCTTTCCTTTT
TTTCCCTCTTTTCTCTCTTCCTTCCTCCCTTCCCCCTCCCCTTCCTCTTC
TCCTTCTTTTTTTTCTCTGTCTTTTCCTTTCTTCTCCCGCCCCCTCCTCC
CGACCCTCCCTTTCTCCTAGTCTCCTCCCCGATCACCGCTGCTTTTTTCC
TCTTCTTACGTCCTGTGTCTTTTTTGTTCTCTATCCCCTTATTCTCTCCT
CCTCTCCACTCCCCCTCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_m15.g1 MSMg01no432_m15.g1 CHROMAT_FILE:
MSMg01no432_m15.g1 PHD_FILE: MSMg01no432_m15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:39 2005
         (122 letters)



>mm_chr3_35816641_35817162
          Length = 522

 Score =  234 bits (121), Expect = 1e-66
 Identities = 121/121 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtctctgggaagaaacagggctgcaggagcagggtgcctgctcagaagctgctactgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtctctgggaagaaacagggctgcaggagcagggtgcctgctcagaagctgctactgtg 262

                                                                       
Query: 61  gtggataaaactggttagaaggcaggggtagggggatggggcatgggggctattgaagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggataaaactggttagaaggcaggggtagggggatggggcatgggggctattgaagga 202

            
Query: 121 g 121
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 122
Length of database: 522
Length adjustment: 8
Effective length of query: 114
Effective length of database: 514
Effective search space:    58596
Effective search space used:    58596
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)