CCCCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATAGGTTCTCACTCGGGGAACTGTTGTTCTCTTAAGCATCCCA
AGCTTGATTTGTCTTTTAGCCACAGAAATACAAAACAGAACTGGAGATTC
CATTAACAGCTCCTGTCCTATTTCTAGAGCCGTTCAAGATTAATTCCTGA
AAAGGAACAAAAGCAGATATGTGAGAGTCAAAGAAAGCTTAAATTCCATA
TTGCTTTCCAGTAGAACACTGAGTATAACCTTTGTATTGGATGCCTTAGA
AAAGAGGTAACAGCAAAAGAAATCAAAATAACCAAGAACATAGATAAGCT
TGATAAGGCCAGTCTTTGCTAGTATGACTGAAGCCAGTCTGGATATAAGA
GACTGTAATAAAAAAAATGAAAGAAACACACAGAAAAAGAGAAGAAAGTA
AGAAGGAAGGAAGGAAATAAGAAACAATAAGTACAACAAAAATCCTTGAT
GTCCTGATATTTGGGGATAAGAAAATGAAAACCAATGCAGAATACTATAC
AGTGTACCGTGATCATAGCAGATTTTTATATTATATGCTTTAAGATTAAG
TGGATCTATTGTGGAAGAAAGAAATCTTTCTACCAACATCACTTAACATT
TCCAGAATATGTATGAATCAACAGTAGATACAGAGGTTGATACTGGCTTA
ATGGTTCCATTGCTGTGGA

GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTAAAATAGTGGTTTATCCAAATATACA
AACACTCAAATAATTCTGGCTCACCACTGAGACAAAATATTTTTCTAAAT
ATTTCAACAATTAATTAATCATACCCACATATGTGTGATCCATTGGTGTA
GAAGTGTAATGCCATGTTATTAGAAGACATGTGTCCAAACTGGTTTTGGT
TTTGTTTGTAGTACCCTAGCAATAGAAGTTATAAAGAAGGGCAATTTTGG
CCACTGTCAGATTTTTTTCTCAAACAAAGTGAAAAATGAAATGTGAGAAT
GAAAAATACCTTCCTATCTATGCTGAAAGATCTAAAAAAAATCCCTTCTT
AAAATTAATACAATTTATAATGCTGCTAAATTTAAAATCAGGACATAAGT
GAGTATAACTACAATAAATAGCCAACAATATTTAGAAAACAAACAGCCAA
ATTTTATTCTTACTTACTTTGCAATTCAAGGTACTTTAAATACATATTTT
AAAATAAATAAATTACTTATATTTGGAATAGCTAACAATTTAATTTATAA
AATTAATAAATATGTAAATAATTAACCACAATATAGATCAAAAAATGGTG
CTTTTAGAAAACCACCAATTGTAAAAAGAATTAAAAACTTCCCCATAAAA
ACTTCCCATGCCCTTGCCCCACTTC

Query= MSMg01no433_a02.b1 MSMg01no433_a02.b1 CHROMAT_FILE:
MSMg01no433_a02.b1 PHD_FILE: MSMg01no433_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:58 2005
         (599 letters)



>mm_chr3_43531114_43532112
          Length = 999

 Score = 1052 bits (544), Expect = 0.0
 Identities = 556/560 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcataggttctcactcggggaactgttgttctcttaagcatcccaagcttgatttg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 560 gaattcataggttctcactcggggaactgttgttctcttaagcatcccaagcttgatttc 501

                                                                       
Query: 65  tcttttagccacagaaatacaaaacagaactggagattccattaacagctcctgtcctat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcttttagccacagaaatacaaaacagaactggagattccattaacagctcctgtcctat 441

                                                                       
Query: 125 ttctagagccgttcaagattaattcctgaaaaggaacaaaagcagatatgtgagagtcaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttctagagccgttcaagattaattcctgaaaaggaacaaaagcagatatgtgagagtcaa 381

                                                                       
Query: 185 agaaagcttaaattccatattgctttccagtagaacactgagtataacctttgtattgga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agaaagcttaaattccatattgctttccagtagaacactgagtataacctttgtattgga 321

                                                                       
Query: 245 tgccttagaaaagaggtaacagcaaaagaaatcaaaataaccaagaacatagataagctt 304
           ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 320 tgccttagaaaagaggtaacagcaaaagaaatcaaaataacaaagaatatagataagctt 261

                                                                       
Query: 305 gataaggccagtctttgctagtatgactgaagccagtctggatataagagactgtaataa 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 260 gataaggccagtctttgctagtatgactgaagccagtctggatataagagactgtattaa 201

                                                                       
Query: 365 aaaaaatgaaagaaacacacagaaaaagagaagaaagtaagaaggaaggaaggaaataag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 aaaaaatgaaagaaacacacagaaaaagagaagaaagtaagaaggaaggaaggaaataag 141

                                                                       
Query: 425 aaacaataagtacaacaaaaatccttgatgtcctgatatttggggataagaaaatgaaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 aaacaataagtacaacaaaaatccttgatgtcctgatatttggggataagaaaatgaaaa 81

                                                                       
Query: 485 ccaatgcagaatactatacagtgtaccgtgatcatagcagatttttatattatatgcttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  ccaatgcagaatactatacagtgtaccgtgatcatagcagatttttatattatatgcttt 21

                               
Query: 545 aagattaagtggatctattg 564
           ||||||||||||||||||||
Sbjct: 20  aagattaagtggatctattg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)