XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTCAG
ATGATGATTCGCTTGCTGCAAAAGGATGTGAACCTGAGTTCAGATCCCCA
GGGCCCACATATAAACCTGGACATGGTAGTGTATGCCTATGATCCCTGTG
CTGAGAAGGGACTACAGTGACCAGCCATTCTAACTAATGGGTGACTCCAG
ATTCAATGAGAGGCCCTGTCTCAAAACCTAAGGGGGAGAGCAATAAGGAC
ACCTGGCATAGACCCCTAGCCTCCACGAGCATGCACATATACAGATACAC
ATGTGAACACATACATGTGTGTCATACAGCCAACATCCAACCATGCCATC
TCTCAAGCATCAGACTCTTTTGATATTAATCTTTAGTTAATCTCTTTATG
CTGTAGGTGTCTGCAACAACAGAGGAACTGTTTCTAGCACCTCATATTAG
TTAATGTTAGCATTCTTCCTAGACTCTGCCATACAGTTACCTGGCTACAG
CGAGGTAGGCCTGGATTCCTATAAAAGGGAATGCTTGGCCCCTCCTCTCA
CTTATTCTCTCTGCCCCTTCTCTCTCTGCCTCTCTTCTCTCCCTGATTCC
TTTTCTCTCCCCCTTTCTTTCTTTCTCTACATGTTCCCTCTCCTCTTCTT
CCTTTTTCTCCTTCCTCCTCTTCTTCCCTCCTCCTATATCCTTTTCCCCC
TCCCTCTTTTTCTCGCCTCTCCTCATTTCTTCGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTGCAGACGAGAGTGGGGGAGAAAGCCCATCTA
GTTTATGGAATGAAAAAATTGGCACATCTCACATCACCAGTGAAACACAA
ACAATTCCAAGGGAGCTTCAGCAACAGTGTGGTCCCAGCCTTTGTGTTAG
GATAAAAGAGGGGCGTGAACGCAGATGAGGCTTCAAATGTGATTCCAGGT
CCGTTGGCAGGAAGATTGATCAAGGTTTGACCTAATTGTGGTCTCTCATT
GATGGGCAAAATGTGAATCCCAATGAAGAATTGATCTGCCACTGAACGGA
GAGTTACTCTACTGTACACAGCCGGCGCCACGGACAGAGTGGCTTAGTCC
TGATGAAGATGTGTCTATTTTGTCTTGTCCATTCAATTTGACATTTGTCT
TCTGGCAGAATATCCATTATTGAGACAAGGGACAGAGATGCTTTTTTATT
TCGCTGGAACAGCATGAAGAAATTTTGCTTTATTTTATTGTAGGGGTGAG
CGGATACCTGCCTTGTCAAAATTATTCTCTCCTGGCAACTCACCTTTTCA
TAAAATCTTTCCCCGTCCTAATACCCATCCCCTCTATTTATCGCACTCCC
CTCTTTTCTTTAACTCTCACTTTCCTCTGCTCCTATTCCTTTTTCCCTCT
TCTTTTTTTCCCCCCTTCCCCTTTTTCCTATTCCTCACTC

Query= MSMg01no433_d01.b1 MSMg01no433_d01.b1 CHROMAT_FILE:
MSMg01no433_d01.b1 PHD_FILE: MSMg01no433_d01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:12 2005
         (459 letters)



>mm_chr3_34170717_34171575
          Length = 859

 Score =  799 bits (413), Expect = 0.0
 Identities = 443/453 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagatgatgattcgcttgctgcaaaaggatgtgaacctgagttcagatccccagg 64
           |||||||||||||||   |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 205 gaattcagatgatgaaaggcttgctgcaaaaggatgtgaacccgagttcagatccccagg 264

                                                                       
Query: 65  gcccacatataaacctggacatggtagtgtatgcctatgatccctgtgctgagaagggac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcccacatataaacctggacatggtagtgtatgcctatgatccctgtgctgagaagggac 324

                                                                       
Query: 125 tacagtgaccagccattctaactaatgggtgactccagattcaatgagaggccctgtctc 184
           ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 325 tacagtgaccagccagtctaactaatgggtgactccaggttcaatgagaggccctgtctc 384

                                                                       
Query: 185 aaaacctaagggggagagcaataaggacacctggcatagacccctagcctccacgagcat 244
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaaacctaagggggagagaaataaggacacctggcatagacccctagcctccacgagcat 444

                                                                       
Query: 245 gcacatatacagatacacatgtgaacacatacatgtgtgtcatacagccaacatccaacc 304
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 445 gcacatatacagatacacatgtgaacacatacatgtgtgtcatacacccaacatccaacc 504

                                                                       
Query: 305 atgccatctctcaagcatcagactcttttgatattaatctttagttaatctctttatgct 364
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtgccatctctcaagcatcagactcttttgatattaatctttagttaatctctttatgct 564

                                                                       
Query: 365 gtaggtgtctgcaacaacagaggaactgtttctagcacctcatattagttaatgttagca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtaggtgtctgcaacaacagaggaactgtttctagcacctcatattagttaatgttagca 624

                                            
Query: 425 ttcttcctagactctgccatacagttacctggc 457
           ||||||||||||||||||| |||||||||||||
Sbjct: 625 ttcttcctagactctgccaaacagttacctggc 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no433_d01.g1 MSMg01no433_d01.g1 CHROMAT_FILE:
MSMg01no433_d01.g1 PHD_FILE: MSMg01no433_d01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:12 2005
         (454 letters)



>mm_chr3_34335888_34336741
          Length = 854

 Score =  847 bits (438), Expect = 0.0
 Identities = 450/454 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgcagacgagagtgggggagaaagcccatctagtttatggaatgaaaaaattggcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tctgcagacgagagtgggggagaaagcccatctagtttatggaatgaaaaaattggcaca 595

                                                                       
Query: 61  tctcacatcaccagtgaaacacaaacaattccaagggagcttcagcaacagtgtggtccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 tctcacatcaccagtgaaacacaaacaattccaagggagcttcagcaacagtgtggtccc 535

                                                                       
Query: 121 agcctttgtgttaggataaaagaggggcgtgaacgcagatgaggcttcaaatgtgattcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 agcctttgtgttaggataaaagaggggcgtgaacgcagatgaggcttcaaatgtgattcc 475

                                                                       
Query: 181 aggtccgttggcaggaagattgatcaaggtttgacctaattgtggtctctcattgatggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 aggtccgttggcaggaagattgatcaaggtttgacctaattgtggtctctcattgatggg 415

                                                                       
Query: 241 caaaatgtgaatcccaatgaagaattgatctgccactgaacggagagttactctactgta 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 414 caaaatgtgaatcccaatgaagaattgatctgccactgaacagagagttactctactgta 355

                                                                       
Query: 301 cacagccggcgccacggacagagtggcttagtcctgatgaagatgtgtctattttgtctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 cacagccggcgccacggacagagtggcttagtcctgatgaagatgtgtctattttgtctt 295

                                                                       
Query: 361 gtccattcaatttgacatttgtcttctggcagaatatccattattgagacaagggacaga 420
           |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 294 gtccattcaatttgacatttgtcttctggcagaagatcctttattgagacaagggacaga 235

                                             
Query: 421 gatgcttttttatttcgctggaacagcatgaaga 454
           ||||||||||||||||| ||||||||||||||||
Sbjct: 234 gatgcttttttatttcgttggaacagcatgaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)