BAC Information

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BAC

Clone NameMSMg01-433E04
Chromosome3 (Build37)
Map Location 94,258,987 - 94,259,312
singlet/doubletsinglet
Overlap genenone
Upstream geneTchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403
Downstream gene2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433E04.T7 (MSMg01no433_e04.b1)MSMg01-433E04.TJ (MSMg01no433_e04.g1)
ACCAG525084AG525085
length779731
length of high quality
(start - end)
129 (68 - 196)326 (70 - 395)
definitionCHROMAT_FILE: MSMg01no433_e04.b1 PHD_FILE: MSMg01no433_e04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:18 2005CHROMAT_FILE: MSMg01no433_e04.g1 PHD_FILE: MSMg01no433_e04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGATCATTTCGGGCTAGAGAATGCCTTGTGTCAAAACAATAAAGAT
GAAATCTAATTTAGAGAAAAGCGGAGCATGCCCATAAAGACAGCACATGC
TCTGTGTGTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTNNT
TNNNTNNNNTTNNTTTCCTTTTCCNNNTNTTTTTTTCTTTCCCCCCCTTT
TCTTTTTCCCCCTCTTCTCCCCTCCCTTTTTTTTCTCCTTTTCTCTCCCC
CGTTCCTCCCCTCTTTTTTTTTTTTTTCCCCCCNACCCCCCCCCTNCCCC
NTTCTTCTTTCCTTTTCTCCCTCTTCCCTCCCTCCCCCTTTCTCCCCCCC
CCTTTTTCTTCCCCTCCGTCTTTTCTTCCCTTTTTTTTTTTTTCTCCCCC
CCCTTCTCCTTTTTCTTTCCCCCCCCCCCCCCTTTCTTCCTTCCCCCCCT
TTTTTCCCCCCCTCTTCTCCTTTCTTTCTTTCCTCTTTCTCTTCCCTTCT
TCCCCCCCTTCCTCTTTTCCCCCTCCCCCCCTCTTTTTTCCTCCACCCCT
TTTTTTTTCCCCCTTTTCCTTTTCTATTCCCCTCTTTTTTTTTTTTCCCC
CCCTTCTTTTTTCTTTCCCTCCTTTCTTTCCCCCCCTCTCTTATCCTCTT
CCTTACTTCCCTTTATCTCTCCCCTTCTTTTTCTTCCCCCTCCTTTCTCT
TCCCTTATTTTTCTCCTCCTTCTTTCCTC
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTCATAAGACATCTTCTTGCCCTGATTAGC
TTAATATATGTCTCATAATTTGACTTCCTGGTCAGAGTTGCCAGCCGAAG
AGAAAACCCACCCAATGCTATACACCAAAGCCTTTTCTGATATGTGTGGT
CCAGAGTGCGCTGTGAGTGTTGTGTTTTATTCTGAAGCTGTACTTTATCT
GTCTTCACTCACTAGACTGTGAATCCATTGAGGGGGGTGTGTGCCCGAGA
CTTTGCATCACACATATGTGATGGGTCCTGGTATTCGGTAAATGATCACC
GAAATGAATAATAAAGGAAGGGGAAATCAACCCCTCAGCTGTGTGTAAGC
AGCAAGCCCTGCGGCTAGAGAGATGGCTTGATGGTTAAGAGCATTTGCCG
CTGCTGATAACCCACGTTGCAATTCCCAGTGTCATATGACCGCCTACAGC
TGTCCCATCCCTTCTAAGCGAGTATCTTATGCTGGAAGATGCTCCGTTCT
TTCCGTCCCTTCGGCTTTGACTCTTCGCCCGTGTCTGCCTTCTTCCCTTT
CATTTCGTCTTGCCTCTATCTTTTTTCGCGGCGCGCTTTTCGTGCGGTTC
TCTCTCCACTTTTCCCTTCCCCTTTCCCTCCTTTCCCGTTTTCCCTTCCT
TCCACTTCCCCCTTTTCCCTTTCTTTCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_e04.g1 MSMg01no433_e04.g1 CHROMAT_FILE:
MSMg01no433_e04.g1 PHD_FILE: MSMg01no433_e04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:18 2005
         (326 letters)



>mm_chr3_94258787_94259512
          Length = 726

 Score =  615 bits (318), Expect = e-180
 Identities = 324/326 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcataagacatcttcttgccctgattagcttaatatatgtctcataatttgacttcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcataagacatcttcttgccctgattagcttaatatatgtctcataatttgacttcct 260

                                                                       
Query: 61  ggtcagagttgccagccgaagagaaaacccacccaatgctatacaccaaagccttttctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtcagagttgccagccgaagagaaaacccacccaatgctatacaccaaagccttttctg 320

                                                                       
Query: 121 atatgtgtggtccagagtgcgctgtgagtgttgtgttttattctgaagctgtactttatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatgtgtggtccagagtgcgctgtgagtgttgtgttttattctgaagctgtactttatc 380

                                                                       
Query: 181 tgtcttcactcactagactgtgaatccattgaggggggtgtgtgcccgagactttgcatc 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 tgtcttcactcactagactgtgaatccattgagggaggtgtgtgcccgagactttgcatc 440

                                                                       
Query: 241 acacatatgtgatgggtcctggtattcggtaaatgatcaccgaaatgaataataaaggaa 300
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 acacatatgtgatgggtcctggtattcggtaaatgatcacagaaatgaataataaaggaa 500

                                     
Query: 301 ggggaaatcaacccctcagctgtgtg 326
           ||||||||||||||||||||||||||
Sbjct: 501 ggggaaatcaacccctcagctgtgtg 526


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)