BAC Information

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BAC

Clone NameMSMg01-433E22
Chromosome3 (Build37)
Map Location 88,419,822 - 88,420,186
singlet/doubletsinglet
Overlap genenone
Upstream geneArhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2
Downstream geneArhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433E22.T7 (MSMg01no433_e22.b1)MSMg01-433E22.TJ (MSMg01no433_e22.g1)
ACCAG525120AG525121
length746755
length of high quality
(start - end)		369 (74 - 442)365 (69 - 433)
definitionCHROMAT_FILE: MSMg01no433_e22.b1 PHD_FILE: MSMg01no433_e22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:22 2005CHROMAT_FILE: MSMg01no433_e22.g1 PHD_FILE: MSMg01no433_e22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTGGAGGTACAGTGTCACTGGAGTGGGCTCTGAGGTTTCA
TAAAAGCCCATGCCAGGCCCAGTGGCTCTCTGCCTGCTGCCTGTGGATCA
GAATGTATATAGTTCTCAGATACAGCTAACAAACCAGGCTGCCACACACC
CCACCATAATGAACTAACCCTTTAACTGTGAACTAACTGTAAGCAACCCC
CCAATTAAATACTTTAAGAACTGACTTGGTCATGGTGTCTTTTCACAGCA
ATAGGAACCCAGAATAAAGACATACTTAATCTTCTTTTTTAATTTGTAAA
AAGAAAAAAATGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACCGACT
GTTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCA
CAATCATCAGTAATGAGATCTGACACCCTCTTCTGGAATGTCTGAACACA
GCTACCTTGTACTTGTCCATTATAAATAAAAACTCCCCCAAAAAATAAAC
CACATCAAAAAATGTTTAATGCACACCTTTTATAATCCCGTTACCCTTCC
ATCCCGCTATTTTATTTCTTCCCCTTTATTTTTTTATCTCCGCCTTATTT
CCCCCCCCTTGTTTCCCTATCATTAATTTTATTTTCTCCTCAAACGTTTA
CTTCTCCCCCCTTTCGCCTCCTTTTTTTTTTTCCCCTTTATCCCTN

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCAGCAGAGGGGACAGGGCCCGAAATGGAGCT
TAGAAATGGAGCCGGATGCGGGACATTTCAATAACTATGCAAATAAGCAT
GCAAAATCAGCACCTGTTCATCTGGCTTGTGTGGCTGAAACCTTATTCGC
TTAGGGCAGCCCTCACACTCAGTGTCTGTGTGGGCAAAACATGGGCCCTT
TAAGAACCGGGCTCTGATTTGTGATCCTAAAATTCTCTAGCTGACACAAC
CTCCTGGCTCCAGTTGGGATTAGCTCATGGGATGGGCTGATGAAATCCCA
GGAAATTCGGTTCTTTGTTGGCTCTAGGCCCAGGGGCTTGTTTCCAAACA
GCAAAGGGTCTACACAGGGCTCTTGTTCTGAGAGGGGGAAATGCCCCCTG
GAGGGCCCTCTTTCCCACCACTCTTGATGGAGAACAGTTTGAGAGGAACC
CGGCCCTCCCATCTTCAGCTGGAGAAGAAACGGTTAGGTTGTCTTGTCTT
GGAAGAAACCTGATTTTTCTCTCCAATCTACAGGGCCCCTATAACCTCAT
CTTCCGTTTTACCAAATCCCCTTCCGCTTTCTTTATTTTCTTTTTCCCCC
TCTCCTTTTCCTTCCGTTTCTCCTCTCCCCCTTTCCTTTCTTTTTTCTAT
CCTTCTCCCTTTTCCCTTTCCTTTCCCTTTCCCCCTTTCCCTTTTACTTT
CCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_e22.g1 MSMg01no433_e22.g1 CHROMAT_FILE:
MSMg01no433_e22.g1 PHD_FILE: MSMg01no433_e22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:22 2005
         (365 letters)



>mm_chr3_88419622_88420386
          Length = 765

 Score =  698 bits (361), Expect = 0.0
 Identities = 364/365 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagcagaggggacagggcccgaaatggagcttagaaatggagccggatgcgggacattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagcagaggggacagggcccgaaatggagcttagaaatggagccggatgcgggacattt 260

                                                                       
Query: 61  caataactatgcaaataagcatgcaaaatcagcacctgttcatctggcttgtgtggctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caataactatgcaaataagcatgcaaaatcagcacctgttcatctggcttgtgtggctga 320

                                                                       
Query: 121 aaccttattcgcttagggcagccctcacactcagtgtctgtgtgggcaaaacatgggccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 aaccttattcgcttagggcagccctcacactcagtgtctgtgtgggcaaaacacgggccc 380

                                                                       
Query: 181 tttaagaaccgggctctgatttgtgatcctaaaattctctagctgacacaacctcctggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaagaaccgggctctgatttgtgatcctaaaattctctagctgacacaacctcctggc 440

                                                                       
Query: 241 tccagttgggattagctcatgggatgggctgatgaaatcccaggaaattcggttctttgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccagttgggattagctcatgggatgggctgatgaaatcccaggaaattcggttctttgt 500

                                                                       
Query: 301 tggctctaggcccaggggcttgtttccaaacagcaaagggtctacacagggctcttgttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggctctaggcccaggggcttgtttccaaacagcaaagggtctacacagggctcttgttc 560

                
Query: 361 tgaga 365
           |||||
Sbjct: 561 tgaga 565


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space:   269136
Effective search space used:   269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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