BAC Information

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BAC

Clone NameMSMg01-434A05
Chromosome3 (Build37)
Map Location 101,704,164 - 101,704,599
singlet/doubletsinglet
Overlap geneSlc22a15
Upstream geneTrim45, Ttf2, Igsf2, Ptgfrn, LOC668578, LOC668583, LOC669017, Cd2, LOC100043490, Igsf3, LOC100043032, Atp1a1, LOC100043036, BC037703
Downstream geneNhlh2, LOC100043047, Casq2, Vangl1, EG433633, Ngfb, Tspan2, Tshb, Sycp1, LOC668425, LOC100043517
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434A05.T7 (MSMg01no434_a05.b1)MSMg01-434A05.TJ (MSMg01no434_a05.g1)
ACCAG525661AG525662
length747804
length of high quality
(start - end)		441 (38 - 478)---
definitionCHROMAT_FILE: MSMg01no434_a05.b1 PHD_FILE: MSMg01no434_a05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:17 2005CHROMAT_FILE: MSMg01no434_a05.g1 PHD_FILE: MSMg01no434_a05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATT
CAAGAATTACCAGAAAAGCTGAAAAGCAGATTTCCCCCCCCCCCAATGCT
AACTAGAGAATGGCTGGCTAGAAGATGAAGTATCTCCCTAGCAGAGTCCC
ATGAAATGGAGTGGCAGAGGCAGGCCATCGGCTGACAGACAGATTTCCAC
AACCCTGACCTGACTCTGTTTTATGTGTTTTGTCTTCAGTTTTTCTAAAG
TATCATTTAAATTCTTATTACTTAGCTACCATGTGATCTAAAAGGTTTTA
CTTTGTCCAAACTCAACTAATATAAAGTAAGACAGGATCCCTGTATCTTG
AAGACGGTTCGCAGATTTAGCTACCTGGAGAGGGTTGGAAGACTAGATCA
GTTGCTAGCTCATTCTCTTACCCAATGGTTGATATTTAGTGTCAGGATAA
GAGCCAAACCAGGAAATCATCAGGACACAAGAAATTAAACTATAACAAAT
CTAAATATAATGATGACTCTGACATCGGCAAGAAACATTTTAATGAATCT
TCAGATTTTAAAAATCAAAATGTATAAATCATTCAAGTCCTTATTGGCTT
GGAGATTATTTAAAGTGGTTCTTCCCCTCATTTTTTGGTTAACGGCTGCG
CCTATTTTTAAAGCCATTAAGAAAGGAATATTGTCCTGTACCCCAATCTC
CTTTTCAAATTGGAGGAACCCGCNTGGGCCCTCCCCTAAATAGTGAG

CCCCCTCAGGGGCCCNNCNAGGCCNCCCAGCNNNNNCNAGCCCCCCCCCC
CCANNNNNACCNNNNNNNNNCGNNCNACCNNNNNNNNNNNNNNNNNNNNN
NNNCCCCAAATGNCCTAANTGGGNTTAAGGNCCCCGGGGNCGGGGCCCCC
CCCCTGGGCCCCTCCCCCAAACCATTTTAAAGGTGGGAACCCCCTAATAA
AAAAAAGGGAATCCCCCCCCGGGAAAAAATTCCCCCCCCAAAAAAAATTT
TCCCCNAAAACCCCCGGGGTCCCCAATCCAAAGGCCCTTTGGGGAAATAA
AAAAACCCCCCCCCGGGGGGGGCCCCCGGAAAAAAAAACCCCCCGGGCCC
CCAAAGGGGAAAAACCCCCCAAAAAAAAAAAATTTGGGGAAACGGGCGGT
GGGGCCCCCCCCCCCCANAAAAAGGAAATTGGGGCCCGGGNCAAGAGNNG
GAAACCGNTGGGGGGGGGGGGGCGGGGGCCACGGGGGCCACNNTACCACA
TCACGNNNNGGGAGGGGGGGCGTGTAGCCCCNNNNNNNNNTTTAACGAGG
GGGGGGCGCCCCCACTAATTGCAAAAAAACTTGGNNNNTNTCNAAAAANN
ACGNCCNNNNNNTACAGCGCCCAGGAACAAAACCCCCCCGGCCAAAAAAA
GGGGGCGGTTTAGCCCCCGNNCTAAAAAAAAAAAAAATTCTTNTTCCACC
CANNAAAAACAAAAAAATCCTAATAANNACCTCCCGCGGGGGCGCCAGAC
GGGCGGNNNNNNNNNNNNNNNNNNNNNNNTNNNTTNNNNTATGNGGGGGG
GGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_a05.b1 MSMg01no434_a05.b1 CHROMAT_FILE:
MSMg01no434_a05.b1 PHD_FILE: MSMg01no434_a05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:17 2005
         (441 letters)



>mm_chr3_101703961_101704799
          Length = 839

 Score =  799 bits (413), Expect = 0.0
 Identities = 431/441 (97%), Gaps = 8/441 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcattcaagaattaccagaaaagctgaaaagcagattt---cccccccccccaat 60
           ||||||||||||||||| |||||||||||||||||||||||||   ||||||     |||
Sbjct: 204 ggaattcattcaagaatgaccagaaaagctgaaaagcagattttttcccccc-----aat 258

                                                                       
Query: 61  gctaactagagaatggctggctagaagatgaagtatctccctagcagagtcccatgaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gctaactagagaatggctggctagaagatgaagtatctccctagcagagtcccatgaaat 318

                                                                       
Query: 121 ggagtggcagaggcaggccatcggctgacagacagatttccacaaccctgacctgactct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ggagtggcagaggcaggccatcggctgacagacagatttccacaaccctgacctgactct 378

                                                                       
Query: 181 gttttatgtgttttgtcttcagtttttctaaagtatcatttaaattcttattacttagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gttttatgtgttttgtcttcagtttttctaaagtatcatttaaattcttattacttagct 438

                                                                       
Query: 241 accatgtgatctaaaaggttttactttgtccaaactcaactaatataaagtaagacagga 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 439 accatgtgatctaaaaggttttactttgtccaaactcaactaagataaagtaagacagga 498

                                                                       
Query: 301 tccctgtatcttgaagacggttcgcagatttagctacctggagagggttggaagactaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tccctgtatcttgaagacggttcgcagatttagctacctggagagggttggaagactaga 558

                                                                       
Query: 361 tcagttgctagctcattctcttacccaatggttgatatttagtgtcaggataagagccaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tcagttgctagctcattctcttacccaatggttgatatttagtgtcaggataagagccaa 618

                                
Query: 421 accaggaaatcatcaggacac 441
           |||||||||||||||||||||
Sbjct: 619 accaggaaatcatcaggacac 639


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 839
Length adjustment: 9
Effective length of query: 432
Effective length of database: 830
Effective search space:   358560
Effective search space used:   358560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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