Query= MSMg01no434_d10.b1 MSMg01no434_d10.b1 CHROMAT_FILE:
MSMg01no434_d10.b1 PHD_FILE: MSMg01no434_d10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:33 2005
(558 letters)
>mm_chr3_135939712_135940668
Length = 957
Score = 1004 bits (519), Expect = 0.0
Identities = 546/555 (98%), Gaps = 1/555 (0%)
Strand = Plus / Minus
Query: 4 ggaattcaattctttctctccatttcacctctcctcacccagtggagaaattacactagt 63
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ggaattcaattcttcctatccatttcacctctcctcacccagtggagaaattacactagt 698
Query: 64 ataagaaagaaccttttattcggaaacatgctgtgataaagaggataataaaaatgccaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ataagaaagaaccttttattcggaaacatgctgtgataaagaggataataaaaatgccaa 638
Query: 124 ggaagtcatgaaaataattaaatgtttaatatattcacacagacaaagaaaaatcacagg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ggaagtcatgaaaataattaaatgtttaatatattcacacagacaaagaaaaatcacagg 578
Query: 184 aaattttacaaaatttaatgaaagaaagatttttaataattataatactcaggcaaagtt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 aaattttacaaaatttaatgaaagaaagatttttaataattataatactcaggcaaagtt 518
Query: 244 tatgatattaaaaagtttaagtagtgattcatgtttcatctgagtattttatttcctttt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tatgatattaaaaagtttaagtagtgattcatgtttcatctgagtattttatttcctttt 458
Query: 304 aagaaattaagaaaactaaatttcctgtctccctaattctcaaaaggagactaacacaaa 363
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 457 aagaaattaagaaaactaaatttcctgtctccctaattctcaaaagaagactaacacaaa 398
Query: 364 tccatgtgatctctctcctcactgcttcacagcactcatggatagcatttcgcccttctt 423
|||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 397 tccatgtgatctttctccttactgcttcacagcactcatggatagcattttgcccttctt 338
Query: 424 ccagttcatttgactttggctctagacataattgtttaacatttccatctaagtttccta 483
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 cctgttcatttgactttggctctagacataattgtttaacatttccatctaagtttccta 278
Query: 484 cagcactgtttatcattcatgtattcaaatatatgtgaattatatataaattatctagca 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 277 cagcactgtttatcattcatgtattcaaatatatgtgaattatatataaattatccagca 218
Query: 544 ttcattttttatact 558
||| |||||||||||
Sbjct: 217 ttc-ttttttatact 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 957
Length adjustment: 10
Effective length of query: 548
Effective length of database: 947
Effective search space: 518956
Effective search space used: 518956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no434_d10.g1 MSMg01no434_d10.g1 CHROMAT_FILE:
MSMg01no434_d10.g1 PHD_FILE: MSMg01no434_d10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:33 2005
(479 letters)
>mm_chr3_135775569_135776447
Length = 879
Score = 779 bits (403), Expect = 0.0
Identities = 454/481 (94%), Gaps = 18/481 (3%)
Strand = Plus / Plus
Query: 1 tgcatgctgctttaggtctaagtctttccaaaacaacaaccaatgtttcaaagtgaaaat 60
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 201 tgcatgctgctttaggtctaagtctttcaaaaacaacaacaaatgtttcaaagtgaaaat 260
Query: 61 gttacaagtatgcagcttacaaaggacttcatctccttagtagcattgcactaacttaag 120
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 261 gttacaagtatgcagcttacaaaagacttcatctccctagtagcattgcactaacttaag 320
Query: 121 tctggctccaccttccaaacctttcttaaacaatgtaacaaactgcttactgttcttagc 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 tctggctccaccttccaaacctttctcaaacaatgtaacaaactgcttactgttcttagc 380
Query: 181 aagtcagaaatggaatagagaggctagcaggttccttgagtggttgcttatagtcactgg 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtcagaaatgggatagagaggctagcaggttccttgagtggttgcttatagtcactgg 440
Query: 241 atgaatggaatgtcttgtgctcggttctatccaccactcctcatgtggggatatcaggtc 300
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 atgaacggaatgtcttgtgctcggttctatccgccactcctcatgtggggatatcaggtc 500
Query: 301 tgtatgcagacacccttacttccctgtcttccaatcaagccgagattgcatcaggaggga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtatgcagacacccttacttccctgtcttccaatcaagccgagattgcatcaggaggga 560
Query: 361 agaaaacaaataagtacaaggaaaaacatatcaaatgccctgagttctgctacttgagtc 420
||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 agaaaacaaataagtacaaggaaaaacatatcaaatgccctgagt--------------c 606
Query: 421 ataaatacttagaggaacagaaacaa--tgtagcagtcatgaacctgtgagcccagtact 478
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 607 ataaatacttagaggaacagaaacagcttg--gcagtcatgaacctgtgagcccagtact 664
Query: 479 t 479
|
Sbjct: 665 t 665
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
