BAC Information

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BAC

Clone NameMSMg01-434F02
Chromosome3 (Build37)
Map Location 158,457,356 - 158,457,775
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433686, LOC624684, Cth, Ankrd13c, Sfrs11, Lrrc40, Lrrc7
Downstream geneLOC100041008, LOC668905, LOC668907, Depdc1a, Rpe65
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434F02.T7 (MSMg01no434_f02.b1)MSMg01-434F02.TJ (MSMg01no434_f02.g1)
ACCAG525891AG525892
length764740
length of high quality
(start - end)
281 (39 - 319)420 (68 - 487)
definitionCHROMAT_FILE: MSMg01no434_f02.b1 PHD_FILE: MSMg01no434_f02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:42 2005CHROMAT_FILE: MSMg01no434_f02.g1 PHD_FILE: MSMg01no434_f02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
TAAATTCCTTGTTCTTCTTCTTTTTTGTTTATTTGTTTGTTTGTTTTTTG
AGACAGTGTTTCTCTGTATAGCACTGCTGGCTGTCCTGGAACTTACTTTG
TAGACCAGGCTGACCTCGAACTCAGAAATCCGCCTGGCTTTGCCTCCCAA
GTGCTGGGATTAAGGGCGTGCACCACCACCACCTGGCAAATTCATTGTTC
TTAATAGCTGAGCAGTACTCCATTCTGGAAATATATCACATTTTCTATAT
CCATTCCTCTGTTGAGGGCGATCTGCCGACTTTCCAGCTTCTGGCTTTAT
AAATAAGGATGCTATGGACATAGTGTAGCATGTGTCCTCATTACAAGTTG
GAACATCTTCTGGGTATGTGCCCCAGATAGGTATTGTTCAATCTTCCAGT
AGCCTTATGTCCAATTCTCTGAGGAACCACCACACTGATTTCCAGAGATG
TTGTACCCAGTTCCAATCCCATCATCTACGCATCGACTGTCCTCCTTTCC
TCATACCTTCTCCTACCACTGTCTTCTCTCCACGATTTTCTTCACTCCAC
CCCATCCTTCACCTTTTCTCACTTATAACTCGCATTTTTCCTATCTAGTC
TTTCCCCTCCTTCTAGCCTTCTCCATTTATCTATTTACCCCCCCTCTCTC
CTTTCCTCCCCCTAGCTTCCCTTTCGTACACATACACTTTTTGTATTACA
TTTCCTCCTCTACA
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTATGAATCAACATGAACCCCATTCCACCCTCTT
GTGTAAGGCAGGAGCTCTTAAACTGTAAGCATGTATAGGGCTACTTGAGA
GGTTTCTTCAATCATGTTGGGGTCTTGATTCTGTGCCTCATATCTTTTGC
AAGACTTTCTTGCTGCAAAGACTGGTAATGTGTTGGTTGCCTGGGATAGC
ATCTGATTCATCATCTCTACTGTATAGCCCATAGGCACCTACACTCCACT
GACTGTCAGATGTTTTGGCAGAAGCTGACTTTATGTTGGCTTGCAGCTTC
TCCATATAAACCATGAGAGCTGTACTGGATAGAATCATGCTGGAATAGTG
TTGTGCTGTATCATTAATAAAGCAGAAAGACTTTCAACTTTCAATATGTT
TTTTTTTTCTTTTGAAATCATTATTCTGGTATGTTCCTTAACATCAATGC
AAATTCTTATTGAGATTGCAATTACTGTTCATCATATAAGAAAACCAGAG
ACCTACGACTTTAATATTATTTATTAAAGACTTTTATTTTCTTGGTACTT
TTAATATAACTTGTCTACTTAATTTTATTCCACACTCATCTACAATTTCA
TGGGGGTTTTTATAAATCCCCACGCTTAACAAACAATATTTTTTTATATT
TTTACTTTGATTCTTTTACTACTTTTTCATCCTCCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_f02.g1 MSMg01no434_f02.g1 CHROMAT_FILE:
MSMg01no434_f02.g1 PHD_FILE: MSMg01no434_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:42 2005
         (420 letters)



>mm_chr3_158457156_158457975
          Length = 820

 Score =  804 bits (416), Expect = 0.0
 Identities = 419/420 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgaatcaacatgaaccccattccaccctcttgtgtaaggcaggagctcttaaactgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tatgaatcaacatgaaccccattccaccctcttgtgtaaggcaggagctcttaaactgta 561

                                                                       
Query: 61  agcatgtatagggctacttgagaggtttcttcaatcatgttggggtcttgattctgtgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agcatgtatagggctacttgagaggtttcttcaatcatgttggggtcttgattctgtgcc 501

                                                                       
Query: 121 tcatatcttttgcaagactttcttgctgcaaagactggtaatgtgttggttgcctgggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcatatcttttgcaagactttcttgctgcaaagactggtaatgtgttggttgcctgggat 441

                                                                       
Query: 181 agcatctgattcatcatctctactgtatagcccataggcacctacactccactgactgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agcatctgattcatcatctctactgtatagcccataggcacctacactccactgactgtc 381

                                                                       
Query: 241 agatgttttggcagaagctgactttatgttggcttgcagcttctccatataaaccatgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agatgttttggcagaagctgactttatgttggcttgcagcttctccatataaaccatgag 321

                                                                       
Query: 301 agctgtactggatagaatcatgctggaatagtgttgtgctgtatcattaataaagcagaa 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 320 agctgtactggatagaatcatgctggaatagtgttgtgttgtatcattaataaagcagaa 261

                                                                       
Query: 361 agactttcaactttcaatatgttttttttttcttttgaaatcattattctggtatgttcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agactttcaactttcaatatgttttttttttcttttgaaatcattattctggtatgttcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)