BAC Information

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BAC

Clone NameMSMg01-434G03
Chromosome3 (Build37)
Map Location 56,261,856 - 56,262,225
singlet/doubletsinglet
Overlap genenone
Upstream geneDclk1, Mab21l1, 4933417G07Rik
Downstream geneLOC100040139, LOC666585, Tm4sf1, LOC383862, Tm4sf4, Wwtr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434G03.T7 (MSMg01no434_g03.b1)MSMg01-434G03.TJ (MSMg01no434_g03.g1)
ACCAG525941AG525942
length733736
length of high quality
(start - end)
245 (66 - 310)374 (68 - 441)
definitionCHROMAT_FILE: MSMg01no434_g03.b1 PHD_FILE: MSMg01no434_g03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:47 2005CHROMAT_FILE: MSMg01no434_g03.g1 PHD_FILE: MSMg01no434_g03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTG
TTCATTACACATAACCATTTTTTTCCAATTTTTTATTAGGTATTTACTTC
ATTTACATTTCAAATGCTACCCCCAAAGTCCCCTATACCCCCCCCACGGT
TCCTTTACCCACCCACTCCCACTTCTTGGCCCTGGTGTTCTCCAGTACTG
GGGCATATAAAGTTTGCAAGACCAAGGGGGTCTCTCTTCCCAATGATGGA
CGACTAGGCCATCTTCTACATATGCAGCTAGAGACATGAGCTCTGGGGGT
ACTGGTAGTTTATATTTTTGTTCCATCCATAGGGTTGTAGACCCCTTCAT
ATCCTTGGGTACTTTCTCTAGCTCCTTCATTGGGGGCCCTGTGTTCTATC
CAATAGCTGACTGTGAATATCCACTTCTGTATTTGCCAGGCACTGGCATA
GCCTCATATGAGACAGCTATACCAGCAAAATCTTCAGCAAAATCTTGCTG
GCCTATGAAATAGTGTCTGCCGGTGGCGGTCTGATTATGGCATGGACCCC
CTGGTAAGGCTGTCTCTGCATGGTTTTTTCTTTCTTCTTAGCTTCTAATT
TTGTCTCTATTACTTCTTTTGCGCCCGTTATTGCCCTCAACGCTTTAAAA
GGCCTCTTCTCTCGTTCTTTCGATATCTTCTGATATCTTTGTTTTTTTGT
TTTTTTCCACTTTTGCCACAATTTACTAGCCTN
GGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAAATAAGCCTCAGAAAATGGCTGCAGTAGGCA
ATGCAATGATCTAGACTCATCCTCCGTGGTGAATTTCCTCACTAGGATTT
GGGCTGGCCTAGAAAAGGGACATCAACACAGCATTCAGATAGACTTGTTT
CCAATCTAAAAATCACATATGGAAGGTCACCTAATGTGGTCTTGAGGGCA
CACCCTCCTTCCTTTCTGCTCCCTCCTGCTGTCTTTCTTGGAAGCAGGAC
AGGCCTTAAGGGCTGTCTCTGGAGCCCTTGCATGTCCCTTCTGTGCCCTC
TTCTCACCTTGATTATATTCTGTTCTCATTCTCCTGGGGTCCCATCACAT
AAATACATGCTTATCTGTTCCCTATGGAATGAGGTTGTCACTTTGAGGAA
ACAGTTTATGCAGCGATCCGAAAGACAAACACTTTAACGTCCTTTTCATT
TCATGACCGTAAAGCTTTGTATCTGTGCAGATTTTTCTGTTATGTGAATC
TATCCATCTCTTGGTCATTTATGTCTGAATATTTTTATCCATAAGTGTTT
TTCCTGTTTTGTTGTTTCTGCTTTGATCTTTTTACAATTCCCAGTTATAA
GTTTCAAAGTTTATATGTTTTCTCTTTCTTTTTTTTTATTTTCCCTTTTA
TGTTCTTTATTCTTTTATCCTTTTTTTTTATTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_g03.g1 MSMg01no434_g03.g1 CHROMAT_FILE:
MSMg01no434_g03.g1 PHD_FILE: MSMg01no434_g03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:47 2005
         (374 letters)



>mm_chr3_56261656_56262429
          Length = 774

 Score =  692 bits (358), Expect = 0.0
 Identities = 367/370 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaataagcctcagaaaatggctgcagtaggcaatgcaatgatctagactcatcctccgt 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 570 caaataagcctcagaaaatggctgcaggaggcaatgcaatgatctagactcatcctccgt 511

                                                                       
Query: 61  ggtgaatttcctcactaggatttgggctggcctagaaaagggacatcaacacagcattca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ggtgaatttcctcactaggatttgggctggcctagaaaagggacatcaacacagcattca 451

                                                                       
Query: 121 gatagacttgtttccaatctaaaaatcacatatggaaggtcacctaatgtggtcttgagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gatagacttgtttccaatctaaaaatcacatatggaaggtcacctaatgtggtcttgagg 391

                                                                       
Query: 181 gcacaccctccttcctttctgctccctcctgctgtctttcttggaagcaggacaggcctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gcacaccctccttcctttctgctccctcctgctgtctttcttggaagcaggacaggcctt 331

                                                                       
Query: 241 aagggctgtctctggagcccttgcatgtcccttctgtgccctcttctcaccttgattata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aagggctgtctctggagcccttgcatgtcccttctgtgccctcttctcaccttgattata 271

                                                                       
Query: 301 ttctgttctcattctcctggggtcccatcacataaatacatgcttatctgttccctatgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 270 ttctgttctcattctcctggggtcccatcacataaatacatgcttatctgttcccgaagg 211

                     
Query: 361 aatgaggttg 370
           ||||||||||
Sbjct: 210 aatgaggttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)