BAC Information

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BAC

Clone NameMSMg01-434L08
Chromosome3 (Build37)
Map Location 67,713,470 - 67,713,869
singlet/doubletsinglet
Overlap geneEG208426
Upstream geneShox2, Rsrc1, Mlf1, Gfm1, Lxn, Rarres1, Mfsd1, LOC667207, Gm412
Downstream geneEG545531, LOC631379, Schip1, Il12a, LOC639530, 1110032F04Rik, Ift80
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434L08.T7 (MSMg01no434_l08.b1)MSMg01-434L08.TJ (MSMg01no434_l08.g1)
ACCAG526185AG526186
length781744
length of high quality
(start - end)
282 (36 - 317)399 (68 - 466)
definitionCHROMAT_FILE: MSMg01no434_l08.b1 PHD_FILE: MSMg01no434_l08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:12 2005CHROMAT_FILE: MSMg01no434_l08.g1 PHD_FILE: MSMg01no434_l08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATGA
GATTCTCCTGCCTCTGCCTCCTGAATGCTGGGATCGAAGGAACATGCCAC
CACATGTAACCTAGAGGTGTGAGTGAAATAAACTTTTTCTTCCTTAAATT
GCCTTTGTCAGGGTATTATATCACAGCCACAGAAGGAAAATTAGGACAGA
GTAAGCACAGGCAAACAATTATGACCAGAGGTATTATCTTAGGAGGGTTG
TACTGCTGTGAACAGACGCCATGACCAAGGCAACTATTATAAAGGACACC
ATTTAATCAGGGCTGTTTTATTCATTCAGAGGTTCAGTCCATTATCGTCA
AAGTGGGATCATGGCAGCATCCAGACTGATGTGGGACTGGACCTGCTGAT
AGAGCTACATCATCATCCATAGGCAGACAGGATAAGACTGGCTTTCTGGC
AGCTTAGTCGAGGGCGTCTATGCCCATGACCACTTAGTATACTTTCTTCA
TTATGGCCACTTCTACTTCTTTGAGTTCTCACCTCTTATTATAGCTACTC
CTCTGCCTTTAGATTATATTTACCCCTCTACGTTTTTTTATTCTTCGACT
GGTACTACAAGGACCATTTCCTCCTCTGTTGTTTCAATCCCATTTGTTGC
TTAAAGTGTTCCGCCTGAGTCCTCCTGTCCTTTTTCCTTTTTCATCAGTG
ATTCAGCACTTTTTCTTTTTACACTCCCCGTTATCCCTTGTTAAAGCAAT
CTTTTTTTATCAGTTCGCTTTCCTCTCCAAT
GTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTCTGTAGATCAAGCTGGCCTTGAACTCAGAA
ATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGACTAAAGCAGTACACCACC
ACGCCCGGCTTGCCCTTGACATTCTTAGCCCTCTCTGTTCCATCCAGCTT
TTCCTCTCCCAAAGGGGGCTCACAGGAAAACAATTTATTTTATGGAGGAT
TTTTTGAGAACTAAGTTAAGTTAGATATAAAGCTCATTAAGAGCTAACCT
AGACCACAATCAGATCTCTTTGCATTAATCATTGTGATTGTAATAATTGT
AATGATTGAAATAATGTCTTTGGCATATCTCATGTGATAGCTTATTATAG
ATGTGTGTTATGTATTTATTCTTTCCTCTTCTCCACCAATCACGTAACAT
TTCCTACAGTGCATCTTGTCCATTACACTATGGCACCATAGGCTCTGACA
CAAACTGCCGAATTGCATTTATATCAATTCTATGCCCGCCTAACTAAAAA
GGCTACTAATTTTTACCCCTATCAATTATCACCTAACTAACAAATGTTAA
AAAATCCTCTTTTCTCCAACGTCAAATGCTTTATTGTCCCATCCATCCCT
CTTCTTTTTTTTATCATTTAACCTCTTCTGTCTACCCTAAAATATTTTTT
CCTTATTTTCCTTCCATTCCTCGGTTCTTTTCCTTCTTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_l08.g1 MSMg01no434_l08.g1 CHROMAT_FILE:
MSMg01no434_l08.g1 PHD_FILE: MSMg01no434_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:12 2005
         (399 letters)



>mm_chr3_67713177_67713976
          Length = 800

 Score =  743 bits (384), Expect = 0.0
 Identities = 396/400 (99%), Gaps = 1/400 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctgtagatcaagctggccttgaactcagaaatctgcctgcctctgcctcccaagtgc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 693 actctgtagatcaagctggccttgaactcagaaatctgcctgcctctgtctcccaagtgc 634

                                                                       
Query: 61  tgggactaaagcagtacaccaccacgcccggcttgcccttgacattcttagccctctctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tgggactaaagcagtacaccaccacgcccggcttgcccttgacattcttagccctctctg 574

                                                                       
Query: 121 ttccatccagcttttcctctcccaaagggggctcacaggaaaacaatttattttatggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ttccatccagcttttcctctcccaaagggggctcacaggaaaacaatttattttatggag 514

                                                                       
Query: 181 ga-ttttttgagaactaagttaagttagatataaagctcattaagagctaacctagacca 239
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gatttttttgagaactaagttaagttagatataaagctcattaagagctaacctagacca 454

                                                                       
Query: 240 caatcagatctctttgcattaatcattgtgattgtaataattgtaatgattgaaataatg 299
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 caatcagatctcaatgcattaatcattgtgattgtaataattgtaatgattgaaataatg 394

                                                                       
Query: 300 tctttggcatatctcatgtgatagcttattatagatgtgtgttatgtatttattctttcc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tctttggcatatctcatgtgatagcttattatagatgtgtgttatgtatttattctttcc 334

                                                   
Query: 360 tcttctccaccaatcacgtaacatttcctacagtgcatct 399
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tcttctccaccaatcacgtaacatttcctacagtgcatct 294


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 800
Length adjustment: 9
Effective length of query: 390
Effective length of database: 791
Effective search space:   308490
Effective search space used:   308490
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)