BAC Information

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BAC

Clone NameMSMg01-434M08
Chromosome3 (Build37)
Map Location 28,983,253 - 28,983,683
singlet/doubletsinglet
Overlap gene6130401L20Rik
Upstream genePld1, Tnik, Slc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527
Downstream geneLOC100040676, Evi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434M08.T7 (MSMg01no434_m08.b1)MSMg01-434M08.TJ (MSMg01no434_m08.g1)
ACCAG526233AG526234
length882764
length of high quality
(start - end)
38 (64 - 101)409 (67 - 475)
definitionCHROMAT_FILE: MSMg01no434_m08.b1 PHD_FILE: MSMg01no434_m08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:17 2005CHROMAT_FILE: MSMg01no434_m08.g1 PHD_FILE: MSMg01no434_m08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCGCCGCTAAACGACTCCTATTTCTACACAACCGCGGAATCATTCTTT
TCCCAAACTTTGTGTGGCTTTGGTGTTACTGTGACTGTGACCTCATAGAA
TGAGCGTTGCCCTCTTCCTTCTATTTGTATCTTTCGCGGAATATTTTGAC
GCTCGACTGATCCCATTTCCTCCTCTCGATTTCACACGTTTCCGCTCGTT
CCTCTCGTCCCGCGTTTCCTATTTTCTATTCTCAACCTTTCGACCTCTTC
ATTTTTTCTTTTTTCCCTTTTCTCACCTTTCCCTTTTTTCACCTTTCACC
TTTTCTACTTTCATATGTCCGCCACCCACTTTTTTATCTTTTTAAAACCN
CTCCTCCTTACCTCCACTTTTTCGCCTTTTTTCTTCCCCCCCTCCTTTAC
TCCTCCTTCCCTTCTCACCTCTTCCTCCCGCTCCTACCACCCTTTTCCCC
CTCCTTCCCCCCCTTTTCTACACTTTTTTCTCTACTTTCTCCCCCTCTTC
CTCCTCTTCTCCAACCTTCCTTCCGACCTTCTTTCCCCCTCTCTCCTCTC
CTCTTCCTCCACTCTTCTTACCCCTTCCTTTCCCCTATCCTTCCCCCTTT
CTTCCCCACTCTCTCTCTCCTCTCTCTCCTCTTTTTCTCCCCATCTTTCC
CCTTTTTCTTCTCGCCTCTCCTCCTACCTTTCCAAACCCTTCCTTCCTTC
CCTCCTTTCCCACTTCTCTCCCACTCTCCTTCCTCCCTCATCTTCTTACA
CTTCTTTTACCCCTCTTCCTCCCCTCTTCTTCTCACTATTTTCTCTACCC
CCCCTCTCTCACCCTCTTTTCTCTCCTTCTTCTCCCTCCCACCCTTCTTT
CACCCTCTTATTCTCCTCCCTCTTCTTCCTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTCACACTTACCAAATAGGCAGGTGCAGTGCCA
GGGCCCAGTGCTCTGCACAGCTGTATTCCACATGCCAAGAATTACAAAGA
AACCTGGCAATAGAACCTACAGTGGTTGCTAATAAGCAAACTCTAGCACC
AGAGAGGACTGAATAGAAATATGACCGAATTTCCCCTACCAGAAAGTATT
AAAAGTCATCAGAGTGACTTCAGCAATTCATTTATAAACACATTTCAATT
ACATGTTTGAAGAATTTTTTTTTGGTTTAGTATCTGACTTCATCTCACCT
GATATATAAATGAGCTACAGTTATTAAACAACACACACACACACACACAC
ATACACACACACACACAGAGAGAAATATCATCCTTCCAGGTCAAATCAAC
ACTGAAAGAAGATAAACACTCTCTCATAAGAGTGGAGTGGAGTGTGTCTC
CCCGCTGGGATTGTTCATCTATGCATGGCTGACTGACACTTCCTATCCTG
TAAGGCTCGTGTTGACCCTCTTTAAACGATCTACCTCATACTGCGCTCTC
TTTCCATCGTCTTCTATCGTTTGTTCTTCGATCGCTTACTTTTTCCACCT
CTAGTTCCTTCATTTTGTATACTTTTTTTACTACTGTTCTAACTTCCTCT
CCCTTTTTTTCCTGTTCTCCGCCTTTCTTTTTCTACCCTTTTTGCCCATT
CCTTTCATTTCCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_m08.g1 MSMg01no434_m08.g1 CHROMAT_FILE:
MSMg01no434_m08.g1 PHD_FILE: MSMg01no434_m08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:17 2005
         (409 letters)



>mm_chr3_28983170_28983978
          Length = 809

 Score =  694 bits (359), Expect = 0.0
 Identities = 403/431 (93%), Gaps = 22/431 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcacacttaccaaataggcaggtgcagtgccagggcccagtgctctgcacagctgtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 514 tctcacacttaccaaataggcaggtgcagtgccagggcccagtgctctgtacagctgtat 455

                                                                       
Query: 61  tccacatgccaagaattacaaagaaacctggcaatagaacctacagtggttgctaataag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tccacatgccaagaattacaaagaaacctggcaatagaacctacagtggttgctaataag 395

                                                                       
Query: 121 caaactctagcaccagagaggactgaatagaaatatgaccgaatttcccctaccagaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 caaactctagcaccagagaggactgaatagaaatatgaccgaatttcccctaccagaaag 335

                                                                       
Query: 181 tattaaaagtcatcagagtgacttcagcaattcatttataaacacatttcaattacatgt 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 334 tattaaaagtcatcagagtgacttcagcaattcatttgtaaacacatttcaattacatgt 275

                                                                       
Query: 241 ttgaagaatttttttttggtttagtatctgacttcatctcacctgatatataaatgagct 300
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ttgaagaatttatatttggtttagtatctgacttcatctcacctgatatataaatgagct 215

                                                                       
Query: 301 acagttattaaacaacacacacacacacacacaca--tacacacacacacacagaga--- 355
           |||||||||||||||||||||||||||||||||||  |||||||||||||||| | |   
Sbjct: 214 acagttattaaacaacacacacacacacacacacacatacacacacacacacacacacac 155

                                                                       
Query: 356 -----------------gaaatatcatccttccaggtcaaatcaacactgaaagaagata 398
                            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 acacacacacacacacagaaatatcatccttccaggtcaaatcaacactgaaagaagata 95

                      
Query: 399 aacactctctc 409
           |||||||||||
Sbjct: 94  aacactctctc 84


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)