BAC Information

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BAC

Clone NameMSMg01-434N05
Chromosome3 (Build37)
Map Location 49,093,773 - 49,093,916
singlet/doubletsinglet
Overlap genenone
Upstream gene1700018B24Rik, LOC100039404, EG666230
Downstream gene4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18, LOC100039628
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434N05.T7 (MSMg01no434_n05.b1)MSMg01-434N05.TJ (MSMg01no434_n05.g1)
ACCAG526275AG526276
length743822
length of high quality
(start - end)
417 (31 - 447)148 (67 - 214)
definitionCHROMAT_FILE: MSMg01no434_n05.b1 PHD_FILE: MSMg01no434_n05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:21 2005CHROMAT_FILE: MSMg01no434_n05.g1 PHD_FILE: MSMg01no434_n05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTATACGACTCCTATTTCGAGAGGATCCGCGGAATTCTCCTCT
CTTACTTCTTTTTCTTCTATGAATATCTTTCTTAAGCATGTCATTCTAAA
TTACTATTGGGATAGTTCTCTTTCAGAGATCAAATCACTATTTTACCTCC
TCTATGTCATGGGATCTATTGTGCATCCTGATATTTGTGTTTTTAAGAAA
GCTTTCTTTTTCCACTGTAATGCTGAGACTTTAATTTCCTTTATCTCTTA
CTTCTAATTTTCCACTCTCTATATCTAACGACGCTGTCACATTAGAGTAC
CAAAGAAAATTTCAGTACGTCTTCCCAGGTTTCTCTCTGTAAAAATCATG
GCGGCGCCCAGATTTTCTCCACAGTTTCTCTCTTTTCAGTTGATTACATG
TCTATAGTCATTGATGACACAAAGTTCAGCTCTAAAATACCTAGGCAATA
GGCAGGAATGCTCATTTGTCTAATATGATAAACTTGTTCACATTCAGCAT
ATATTTCCGGCACAAGCATATTGATATTATAGATGCTGCACCATAATTGA
ATTATTCCTATTGGAATCTAGCTATTACATTCATTTTCTACATTGTCCTA
TTATCTTGAAATTTTTAAAGTCATTTTTTTTTAGATCTTTATCTTTCCAA
AAGATTTTTGGGCTTATTCTTATTCCTTTTGAAAATATCTTACAATATGC
GCTATATTATATCTTCTCCTTTTATGACATTTGACTCTATCCC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACAGCTAACATTGCAGTTAGTATTAATCCTGTCC
AAAAATTTTCAGATTATATGACCAGAGGGACAGTGGAAAACATAAGGTCA
CTCACATATCTATACACTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTNNNNNTNNNNNANNTTNTTATTTTTTTATATTTTATATTT
TTTTTTTATTTTTTTTTTCTTTCTTCTTTCTTCTTTCCTTCCCTTTCCCT
CTCTCCACTTTTTTTTCTTCTTCTTTTTTTTCTTTCTCTTCTTTCTTTTC
TTTATCTTTCTTTTTCCTTTTTTCTTTTTTTCATATTTTTACTCTTTATC
TTTCCCCACACTACCTTTATTTCTTCTTTTTCTATACCCATTTATCTTTT
TTTATCTTTTTTCTTATACTTCTTATTCTCACTTTTTTCTCTTCTCTACT
ACTTTTCTATTTCTTTTCTTCAATTTTTTATCCATTTTTTTCTCTTTCCT
TTTCTTCTTCTTTTTCCTTCTTTTCTTTTTTCTTACCAATACATCTTTTC
TCTTTTTCTCTCTCTTTCATACCTTTCTTTTTCTAATTTCTATTATCTCT
TTTTCTTCTCCTTTATTTCTTCCTTTTTTCTATTTTCTCTTCTCTTCCTT
CCTCCCTTTTCTTTTTTTCTTTCTTTCTTCCTTTCTTTTCTCTTTTTTCT
TTCTCCTCTTTTTATTTTACTATTTAGATTTTGTTATTATCCTCTCTTTC
NACTTCTCTTCTTGACTTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_n05.g1 MSMg01no434_n05.g1 CHROMAT_FILE:
MSMg01no434_n05.g1 PHD_FILE: MSMg01no434_n05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:21 2005
         (148 letters)



>mm_chr3_49093614_49094161
          Length = 548

 Score =  279 bits (144), Expect = 7e-80
 Identities = 144/144 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagctaacattgcagttagtattaatcctgtccaaaaattttcagattatatgaccaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 acagctaacattgcagttagtattaatcctgtccaaaaattttcagattatatgaccaga 244

                                                                       
Query: 61  gggacagtggaaaacataaggtcactcacatatctatacactctgtgtgtgtgtgtgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gggacagtggaaaacataaggtcactcacatatctatacactctgtgtgtgtgtgtgtgt 184

                                   
Query: 121 gtgtgtgtgtgtgtgtgtgtgtgt 144
           ||||||||||||||||||||||||
Sbjct: 183 gtgtgtgtgtgtgtgtgtgtgtgt 160


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 548
Length adjustment: 8
Effective length of query: 140
Effective length of database: 540
Effective search space:    75600
Effective search space used:    75600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)