BAC Information

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BAC

Clone NameMSMg01-434O09
Chromosome3 (Build37)
Map Location 76,030,239 - 76,030,588
singlet/doubletsinglet
Overlap geneFstl5
Upstream geneSerpini2, Wdr49, Pdcd10, Serpini1, Golph4
Downstream geneLOC100041625, LOC100041635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434O09.T7 (MSMg01no434_o09.b1)MSMg01-434O09.TJ (MSMg01no434_o09.g1)
ACCAG526329AG526330
length736721
length of high quality
(start - end)
430 (37 - 466)350 (320 - 669)
definitionCHROMAT_FILE: MSMg01no434_o09.b1 PHD_FILE: MSMg01no434_o09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:27 2005CHROMAT_FILE: MSMg01no434_o09.g1 PHD_FILE: MSMg01no434_o09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTG
TTTTTCCAGGAGCCCCATTTTTAAATGGGATTATTTGATTTTCTGAAGTC
CACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATT
TAGGATAGGTAAAGATCCTTTCCCAATCTCTTGGTGGTCTTTTTGTCTTA
TTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCA
TTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGA
ATTTTTCCCCTGTTTTTATATCTTCAAGACTTTTCCCCACTTTCTCCTCT
ATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGATCCTTGATCCACTTAGA
TTTGACCTTAGTACAAGGAGATAAGTATGGATTGATTCGCATTCTTCTAC
ATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTC
TTCCACTGGATTGTTTTACCTCCCTTGTCTAAGATCATGTATCCATAGGT
GTGTGGCTTCCTTCTCTGGTTCCTCCATTCCTATTCCATTGGTCTACGTA
TCTGTGCTCATATCATTTACCATGCAATCTTTTTTCTCTATTGCTCTGTT
ACTTTTTCTTTTTGTTTGGGTATGTTTTTTTTCCACTTATATAGTTTGTT
TTAGCATTTGAATCATTTTCTTTAGTTTTCCTTTGN
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGGCCTTGTGAGAAATCCA
CCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGGGTGTGCCACTATGCG
CAGATAAAATAGTATTATTTTAATATTAGAATATAAATGCATCATCTCTC
TCTTCCTTGTCCTCCCTTCAAACAATTCCACATATCCCAACTTGTTCTCT
TTCCAATTTTTTGCCTCCTTTTTATTATTTTTCTTACATACATACATGTA
TACACATACATATTTTTAAATATATTATAATACAAGCTATTTAGTCTAAT
GTAACTTTCCATTCACTAACTTTTCAAGTACTTGGAAGAATTGAATTGCA
TGTTAGACAGTATTTGTACTGTGGCATAAAAGAAAACAACACAAAACAGT
AAAACTTTTATCTTTAAAATCTGAATATAGAAAAAACATTTCTAATTAAA
CATGGCAAATTTCCCAATGTACAAATAATAACTGATTAAATAAAGTGTTA
TTCATTTAAAATAAAACACATGTTATTTATATATATTATTTCTTTTGATC
TGATTTACCATTTTTATCATTTTAAACACTAAACCATATTTAACAATATT
TGGTTGAGTATTAAAATAATGTCATATGGGTAAATAGTCCTACATAGTGC
CTGAAATTTATTAGTTATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_o09.g1 MSMg01no434_o09.g1 CHROMAT_FILE:
MSMg01no434_o09.g1 PHD_FILE: MSMg01no434_o09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:27 2005
         (350 letters)



>mm_chr3_76030039_76030788
          Length = 750

 Score =  669 bits (346), Expect = 0.0
 Identities = 349/350 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatattataatacaagctatttagtctaatgtaactttccattcactaacttttcaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 atatattataatacaagctatttagtctaatgtaactttccattcactaacttttcaagt 491

                                                                       
Query: 61  acttggaagaattgaattgcatgttagacagtatttgtactgtggcataaaagaaaacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 acttggaagaattgaattgcatgttagacagtatttgtactgtggcataaaagaaaacaa 431

                                                                       
Query: 121 cacaaaacagtaaaacttttatctttaaaatctgaatatagaaaaaacatttctaattaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 cacaaaacagtaaaacttttatctttaaaatctgaatatagaaaaaacatttctaattaa 371

                                                                       
Query: 181 acatggcaaatttcccaatgtacaaataataactgattaaataaagtgttattcatttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 acatggcaaatttcccaatgtacaaataataactgattaaataaagtgttattcatttaa 311

                                                                       
Query: 241 aataaaacacatgttatttatatatattatttcttttgatctgatttaccatttttatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aataaaacacatgttatttatatatattatttcttttgatctgatttaccatttttatca 251

                                                             
Query: 301 ttttaaacactaaaccatatttaacaatatttggttgagtattaaaataa 350
           |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 250 ttttaaacactaaaccgtatttaacaatatttggttgagtattaaaataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space:   252681
Effective search space used:   252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)