BAC Information

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BAC

Clone NameMSMg01-434P18
Chromosome3 (Build37)
Map Location 87,850,450 - 87,850,873
singlet/doubletsinglet
Overlap geneGpatc4
Upstream geneKirrel1, LOC100042355, Msr2, Cd5l, Fcrl1, Fcrl5, Etv3, EG546801, Arhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2
Downstream geneApoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434P18.T7 (MSMg01no434_p18.b1)MSMg01-434P18.TJ (MSMg01no434_p18.g1)
ACCAG526394AG526395
length758736
length of high quality
(start - end)		419 (62 - 480)413 (68 - 480)
definitionCHROMAT_FILE: MSMg01no434_p18.b1 PHD_FILE: MSMg01no434_p18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:33 2005CHROMAT_FILE: MSMg01no434_p18.g1 PHD_FILE: MSMg01no434_p18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:33 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGG
ATAGTTCCCTTCTTCTAAGTATCAACAGTTGGAATTTAAAAAAATAAAGA
GAAAAACTGTTGGAGTGGCCCATCATCTCCTACTCCACTGTAATCCACCG
CAGGGCTGGCTCTGATGGTTAAGATGAATCCGCTTCAGGCTGGGAGATCT
GAGAGCAGGATGCACTGTGTGTTCAGAGCCTTCTACCAAGGTACATTTCC
TTGGCATTATGACTTGATAAAACTGAGAGCATCTGCTACAACTTTAGCTT
TTTTAGTATAAAAGCTCTTGCCAAGGTAAATGAGGAGGCCCTTGGGAACA
CAGTGACCCTTGTACCAGGCTAGGAGGTTACAAGCCCCTGAGACTGAGTG
TCCAGAATATCAGCATGCAGGTTCTATGTTTAACTGCAGGTGGAGTGAGG
TGGGTGTTAACTTTTATTTTGATCACCTTGTAGTCTTTTAAACCCTTGGT
CTCTGAGGTCAAGTTCACTACTTGTCTTCCAGTCACTTGCTTGCTCTCCT
GTGGAGCTCTTTGCTTTAATCTGGCCCACTTGTCTCTTTCCTCTATTCCT
TGTTGCCCGTCTTCTTTCGCATTCCTTATCCTCCTCTATTCTTTCCTCCT
CACTCCCCCTCTTCTCTTTTTTACTTTTTTTCTTCTCAGGCACTTCTTTA
TTCTCCGCCCTCATTTTTCTTTCTGTTTTCTTTTCCCTTTTTCGTTTCCT
CCTCATTG

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCCTTTACCACCTTCCTCTTCCACACTCAAAGT
GGCTGTCACATTTTTTTTTTTTAATTTGTGGTAAAATGTGCACGACATAG
AAGTAGCCATTGTGTGTTTGTGCACATGGGACTTCGTGTGCACATGGAGG
CCGGAAGACAACTTGAGGTGCCGTTCCTCAGGCTATCATCCACCTTCCTC
ACTGAGACGGGCTCTCCTGCTGGTCTGGAGCTCACATGTCAGGCTAGGCT
AGCTGCCCACCAACCCCCAGGGATCTGCCTGCGAGCTTCCATTCTCCTAG
CATGAGATCTCAAGCATGCACCACCATGCCCAGTTCTCAGTTCCTCCCTC
CCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCATTC
TTTTCTCTTTCTTTTCTTTTTCTCTTTTTGNTTTGNTTTGNTTGGNTTGG
NNTTGGTTGNNNNNNNNNNNNTNNNNTTTNNTTTTTTTTTTTTTTTNTNN
TTTTTTTTTTTTTNTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTNTTTTTNTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTT
TNTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_p18.b1 MSMg01no434_p18.b1 CHROMAT_FILE:
MSMg01no434_p18.b1 PHD_FILE: MSMg01no434_p18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:33 2005
         (419 letters)



>mm_chr3_87850215_87851033
          Length = 819

 Score =  569 bits (294), Expect = e-166
 Identities = 386/440 (87%), Gaps = 37/440 (8%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttctaagtatcaacagttggaatttaaaaaaataaagagaaaaactgttggagtggccc 60
           |||||| |||| |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 659 cttctacgtattaacagttgaaattttaaaaaataaagagaaaaactgttggagtggccc 600

                                                                       
Query: 61  atcatctcc---------------------tactccactgtaatccaccgcagggctggc 99
           |||||||||                     |||||||||||||||||| |||||||||||
Sbjct: 599 atcatctcctggagttggccctgctgactttactccactgtaatccactgcagggctggc 540

                                                                       
Query: 100 tctgatggttaagatgaatccgcttcaggctgggagatctgagagcaggatgcactgtgt 159
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 539 tctgatggttaagatgaatccgcttcagtctgggagatctgagagcaggatgcaccgtgt 480

                                                                       
Query: 160 gttcagagccttctaccaaggtacatttccttggcattatgacttgataaaactgagagc 219
           | |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| 
Sbjct: 479 gatcagagccttctaccaaggtacatttccttgggattatgacttgataaaaccgagagt 420

                                                                       
Query: 220 atctgctacaactttagcttttttagtataaaagctcttgccaaggtaaatgaggaggcc 279
           ||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 419 atctgctacaactctagcttttttagtataaaagctcaagccaaggtaaatgaggaggcc 360

                                                                       
Query: 280 cttgggaacacagtgacccttgtaccaggctaggaggttacaagcccctgagactgagtg 339
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 cttgggaacatagtgacccttgtaccaggctaggaggttacaagcccctgagactgagtg 300

                                                                       
Query: 340 tccagaatatcagcatgcaggttctatgtttaactgcaggtggagtgaggtgggtgttaa 399
           ||||||||| ||||||||||||||||||||                |||||||| |||||
Sbjct: 299 tccagaataccagcatgcaggttctatgtt----------------gaggtgggggttaa 256

                               
Query: 400 cttttattttgatcaccttg 419
           ||||||||||||||||||||
Sbjct: 255 cttttattttgatcaccttg 236


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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