BAC Information

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BAC

Clone NameMSMg01-435D04
Chromosome3 (Build37)
Map Location 127,520,346 - 127,520,756
singlet/doubletsinglet
Overlap geneBC002199
Upstream geneCamk2d, Ank2, LOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp
Downstream gene5730508B09Rik, LOC100043382, EG668828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435D04.T7 (MSMg01no435_d04.b1)MSMg01-435D04.TJ (MSMg01no435_d04.g1)
ACCAG526558AG526559
length764812
length of high quality
(start - end)
416 (45 - 460)39 (79 - 117)
definitionCHROMAT_FILE: MSMg01no435_d04.b1 PHD_FILE: MSMg01no435_d04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:50 2005CHROMAT_FILE: MSMg01no435_d04.g1 PHD_FILE: MSMg01no435_d04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCACATTTCTTCCCACGTTTCTTCCATGACACCAGTCACTCTGCTCA
CCCACTCTGGGCCCCGAGTCTGTCTACTTTTAGTCCCTTCTGCTGTGGAC
CAGAAATAAAAAAAAAATGCTACAACAATTTGGCCCTCAGCCTCCAGCAA
CAGTCTTTGAACTTATACAAGGTGATCACCTACACTAACTACTCCGTAGC
TGCCTTAAGTTTCTTATTCAAGCTTTTTTCCTTAAGGGCAACTTCATTTC
ACTTCCACTTCAGTGCTTAAATTCACCGTATTCTTGCTTCCCTTCCTAAA
GATGACCCTCCTGAGGTCATCACTACCCTTACGATCCTTCAAGTCCATGG
CCTGCATCTCCAGCACTTCACGTGTGCAGCCACTCCATGTAAAGTACAGG
TAGAGATGACACGGGAGGGAGATGAGATGGACAGGATTAAGATAAGCATG
CGGTTGAGCTGGCATGTAAATGCAGGTAGTCCAGCACCCAGTGTGCTTCT
TGTCTCTGTGTCCTTGTTTCCCCACACCCCTCAGGCCTCTGAAAATATCA
CCTGCCATCCCTCTATCAATTGTTGACCCCTACCTCTCCCCCCTGTTTTT
TCCCCCCCCCCCTCCTTGTTCTCCCTTTTAACCCTTTTTTTACTGCTCCT
TCCCCCTCTTTTATTTTTTTTTTCCCGCCCTTTATTTTTTTAACATTTTT
ACCCCCCCCTCCTC
NTCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGACAGGAGAAAAGGAGATGT
GAAGAGGGATGGGGGTCGTTTCTCCCCCCCTTCCTCGCCCTTTTTCCCTC
CTTTTTCCTCCTTCCCCTTTTTCTCCCTTTCTGTCCTTTTCCCCTCTTCT
TCTCTTCCTCCCTTTTTCTCTCCCCCCTTCGTTCCTCTTTCCTCCTCCTT
TTGTGCCTTCTTTCTCCCCTTTTTCCCCTCCCCTGTTTCCCCCCCCCTCT
TCGCTTCCCCTGCTCTCCCCGTCTTCTTTTTTTTTTTTTTGCCCCGCGTC
TCCCCGTTTCCTCCCTGGCTGTTTTCTTCCGCCCCCCTTTCCCCCTCTTC
CCCCCTGCCCCCTCGTCTTTTCTCTTCCTGGTTTCGCTAGTTTTTTTTTC
CCCTCGCCTTTTTTTCCCCCTTGCTTTTCCTCCCCCCTTTTTTTCCCCTT
TTTCCCCCCCCTTTCCTTTTTTTCNCTCTCCCCTGTCTTCTGGTGTTTTT
TCCCCCTCNCTCTTCTCNNNCCNNNNNNNCNNNNNCTCCCCCGTTGTTGT
TGNNNNNNNNNNATGTTTGTGGNNNNCNNNNNNNNNNNNNNNNNNNNNNN
NAGNNCAATGCNNCCTCTAGGATGAATTGNNNACTCTGTGGNNNNNTTTN
NNACTTGAAGTAAAGTCGTCCCCCCTCNNNNCCATCGTCTTCTTGCTCTC
CCTTAANNNNNNNANNNNNTANNNNNAGCGGNNNNTCNNNNTTACCNNTC
TCTTTGCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_d04.b1 MSMg01no435_d04.b1 CHROMAT_FILE:
MSMg01no435_d04.b1 PHD_FILE: MSMg01no435_d04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:50 2005
         (416 letters)



>mm_chr3_127520142_127520956
          Length = 815

 Score =  669 bits (346), Expect = 0.0
 Identities = 397/414 (95%), Gaps = 5/414 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacatttcttcccacgtttcttccatgacaccagtcactctgctcacccactct 64
           ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacacaccttcccacgtttcttccatgacaccagtcactctgctcacccactct 264

                                                                       
Query: 65  gggccccgagtctgtctacttttagtcccttctgctgtggaccagaaataaaaaaaaaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 265 gggccccgagtctgtctacttttagtcccttctgctgtggaccagaaat-aaaaaaaaat 323

                                                                       
Query: 125 gcta-caacaatttggccctcagcctccagcaacagtctttgaacttatacaaggtgatc 183
           || | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 324 gc-agcaacaatttggccctcagcctccagcaacagtctttgaacttatacaaggtgacc 382

                                                                       
Query: 184 acctacactaactactccgtagctgccttaagtttcttattcaagcttttttccttaagg 243
           |||||||||||||||||| ||||| ||||||||||||| |||||| ||||||||||||||
Sbjct: 383 acctacactaactactccctagcttccttaagtttcttgttcaagtttttttccttaagg 442

                                                                       
Query: 244 gcaacttcatttcacttccacttcagtgcttaaattcaccgtattcttgcttcccttcct 303
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gcatcttcatttcacttccacttcagtgcttaaattcaccgtattcttgcttcccttcct 502

                                                                       
Query: 304 aaagatgaccctcctgaggtcatcactacccttacgatccttcaagtccatggcctgcat 363
           ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 503 aaagatgacccacctgaggtcatcactacccttatgatccttcaagtccatggcctgcat 562

                                                                 
Query: 364 ctccagcacttcacgt-gtgcagccactccatgtaaagtacaggtagagatgac 416
           |||||| ||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctccagtacttcac-tcgtgcagccactccatgtaaagtacaggtagagatgac 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 815
Length adjustment: 9
Effective length of query: 407
Effective length of database: 806
Effective search space:   328042
Effective search space used:   328042
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)