BAC Information

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BAC

Clone NameMSMg01-435G20
Chromosome3 (Build37)
Map Location 13,096,929 - 13,097,347
singlet/doubletsinglet
Overlap genenone
Upstream geneEG621965, LOC100039798, EG668033, LOC668037
Downstream geneLOC100039823, LOC100039861, 0710005M24Rik, LOC100041679, LOC100041667, LOC100039882
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435G20.T7 (MSMg01no435_g20.b1)MSMg01-435G20.TJ (MSMg01no435_g20.g1)
ACCAG526734AG526735
length794785
length of high quality
(start - end)		426 (40 - 465)418 (71 - 488)
definitionCHROMAT_FILE: MSMg01no435_g20.b1 PHD_FILE: MSMg01no435_g20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:09 2005CHROMAT_FILE: MSMg01no435_g20.g1 PHD_FILE: MSMg01no435_g20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TCATCTTTATAGATTAATGGTATTTGTTAAAATTGACACTAACACATAGC
TAAATTCTCACAGTGAAGAGATTGGGGCTCATCCAGAGAACTGTGGCATT
CTAAACATTTTTTTCTTCCACAAAAGAGTCTGGCAATGTTTCCCTTAAGC
TAATGCTTCATTAGACCTTTTGTCCCTGTGGAGATAAGATCTTATAATTC
CTGTGCTTAAATCGGAACCTTATTGCCTAGCACAGTGGACATGACAAATG
TGTTTAATGACCATTTGGTGAACAAAGAGGCAGAATTATGAACACTCACT
GAACCCTCTCATAATTGTTCTATTTACCTGGGATTTGCCACCTGCAAATT
CCTGGTGTGGCTTTGCGAGTTTTCCTAGCCACTTACTTTTGTACATAATA
TAATTTTCTAGTCTAATACAGTGCTCACACCCTGCTCCAGAAACTCACTT
TTTCTTTTATAAACAATATAGTATAGCAGAGAATTTTTATTGCCATCCCA
TCTTTCTTCATCACAATTTAGTGCTTTTTTCACCAGTTCCTATAATAAAA
TGTCATTTATCCCGCACATTTCCATACTGACTCTTTTTTTATCTCCTCCA
TTATATCCTTCCCTTACTCATCCTTTATTCCTCCATATTCTTTCTTCGTT
CTTCTTTCATACTTTTATCTATTCCCTTACATCCCCGATTCCTTACCCTC
TCCTTTATTATTATTTCTCATCCTTTTTCCCCCTTTTTACAATC

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAGGCCCATACCTAAACATAGTAAAAGCAA
TATACAGAAAACCAGTAGCCAACATAAAACTGAATGGAGGGAATCTTAAA
GCAATCCCACTAAAATCAGGGACTAGACAAGACTGCAAACTCTTTCCATA
CCTATTCAACATAGTACTTGAACTCCTAGACAGAGTAATTAGAAAACAAA
AGGAGACCATAGGGATAAAAATAAGAAAGGAAGAAATCAAAATATCACTA
TTTGCAGATGATACAATAGTCTATTTAGGTGAGCCCAATAAATTCCACCA
GAGAACTCCTAAACCTTATAAACAACTTCAGCAAAGTAGTAGGTTATAAA
ATTTACTCAAACAAATCAGTGGCCTTCCTCTACACAAAGGATAAACTGGT
TCAAAAAGAAATTAGGGAAAAAACACCCTTCACAATAGTCGTAGATAATA
TAAAATACCTTGGGGTGACTAGGAAAGTGAAAGATCTGTATCATAAGAAC
TTTAAGTCTCTGAAGAAAGAAATAGAAGATCTCTTAAGATGGCAAGATCT
CCCTTGCTCATGGATTGGCACGAATATTATCCCAAAAAGGGACTTCTGGG
TGAAAGAACTCTAAATTTCCCGCGACCCCCTCAAAATTTAAATCCATTCT
TCTCAAAGGAAAGAAAAAAATTTTCTACCCTCTTGGAAAACAAAACCCCC
TGGAAGGGGAAGTTCTTTCCCCTTACACAAAGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_g20.b1 MSMg01no435_g20.b1 CHROMAT_FILE:
MSMg01no435_g20.b1 PHD_FILE: MSMg01no435_g20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:09 2005
         (426 letters)



>mm_chr3_13096725_13097550
          Length = 826

 Score =  795 bits (411), Expect = 0.0
 Identities = 417/419 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcatctttatagattaatggtatttgttaaaattgacactaacacatagctaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gaattcttcatctttatagattaatggtatttgttaaaattgacactaacacatagctaa 564

                                                                       
Query: 65  attctcacagtgaagagattggggctcatccagagaactgtggcattctaaacatttttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 attctcacagtgaagagattggggctcatccagagaactgtggcattctaaacatttttt 504

                                                                       
Query: 125 tcttccacaaaagagtctggcaatgtttcccttaagctaatgcttcattagaccttttgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tcttccacaaaagagtctggcaatgtttcccttaagctaatgcttcattagaccttttgt 444

                                                                       
Query: 185 ccctgtggagataagatcttataattcctgtgcttaaatcggaaccttattgcctagcac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ccctgtggagataagatcttataattcctgtgcttaaatcggaaccttattgcctagcac 384

                                                                       
Query: 245 agtggacatgacaaatgtgtttaatgaccatttggtgaacaaagaggcagaattatgaac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agtggacatgacaaatgtgtttaatgaccatttggtgaacaaagaggcagaattatgaac 324

                                                                       
Query: 305 actcactgaaccctctcataattgttctatttacctgggatttgccacctgcaaattcct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 actcactgaaccctctcataattgttctatttacctgggatttgccacctgcaaattcct 264

                                                                      
Query: 365 ggtgtggctttgcgagttttcctagccacttacttttgtacataatataattttctagt 423
           ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ggtgtggttttgtgagttttcctagccacttacttttgtacataatataattttctagt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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