BAC Information

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BAC

Clone NameMSMg01-435G22
Chromosome3 (Build37)
Map Location 86,130,048 - 86,294,646
singlet/doubletdoublet
Overlap geneLrba
Upstream geneLOC100042237, LOC100042125, Pet112l, 9930021J17Rik, Glt28d2, LOC100042265, Gm1019, Sh3d19, Rps3a, LOC634201
Downstream geneMab21l2, EG667024, LOC100042319, Dclk2, EG625055, Cd1d2, Cd1d1, LOC667897, Kirrel1, LOC100042355, Msr2, Cd5l, Fcrl1, Fcrl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435G22.T7 (MSMg01no435_g22.b1)MSMg01-435G22.TJ (MSMg01no435_g22.g1)
ACCAG526738AG526739
length798821
length of high quality
(start - end)		437 (41 - 477)198 (74 - 271)
definitionCHROMAT_FILE: MSMg01no435_g22.b1 PHD_FILE: MSMg01no435_g22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:10 2005CHROMAT_FILE: MSMg01no435_g22.g1 PHD_FILE: MSMg01no435_g22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:10 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(86,294,215 - 86,294,646)(86,130,048 - 86,130,245)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGGATCCGCGGAATT
CCTATTTCAATAGCTGTTATCAAGACTGTAGATATGATCAGTGCTAAAGG
GGTGCAACTATTTTTGAGTCTCCATGAACTAAACTACAGAATAAATGAGC
ATATTTACATACAAAGTTTTATATTTATATTTATCTACAGTCATCTATTT
ATTTAATATCAGTATAATTCCAGTTTCCTGTCTTGTTATTTATAACCCCC
ATAATTAAAGAATAATTTAGTTCTCATTCATAACCTATATACTGATTTGA
CCTATCTTTGTAAACATGACCAAAGTCCCACCATACACAGATGACCTATC
CAACCAGTATCTCCTGCTGAGACTTCTCCGTGAATATTTTCTAAACAGTA
CTCAGGCTCTGGCAATCCAGGCCAGGCCTCCATCCTCCCCAGCAAAGCCT
GCAACAGTACACATAAATAGGTCTTGCCATTGTGTAGACACCCACCTCAG
TCCATTTTTCCTTCAGCATCAACCATCTGATAAAAATGCCTTCACCCTGC
TCAAGCTGAAAAGCTCGTTTCCCGCAACCGGAAACTTTCCGCGCTTTTGG
TAAACCCCTTGGGTTCCCAAACCCCCAGGTGGGGGCACAACACTGGAAAG
CCCCCTAATAAATTTCGGGTAGACTCCCCGTCAAATCTTTTGCGGGAACA
ACCATTTTCTTCCCCCCACAATGGGGGTGGCCCCTTCTTTACGGTATAAC
GCCCCTCGTCATTATAAAATTTCTCCCCTCTTGCCCTTTACGTCTTAN

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTATATACTAAATCTTATTTTTAAGAT
CATGTCATCAGAGTAAAGGATTTTCAGAATTGCAAGTACTTTTTGTGTGG
GGAGGAGTTCTAGTTACCCGCTGTGCTGCTTCTGTGTGTAGTGTGCCACA
TCATAGCTTTTTTTTTTTTTAAAAGAACTTTAAAAAATTTTTATATTCTA
TATTATTGATTGTTTGACTGGTTGAGATGTCTCCTCCGCCCTCTTGTTTT
TTGTTTCACCCCCCCCGTAAACTTTTTTTTTCTCCCCATTTTTCCCTGAC
CCCCCCTCCCCGCCTTTTTTCTTTTTATTTCCCCCCCCCCCCCTCTTTTT
TTTCACCCTTTTTCTTCCCCCCCCCCTTCTTTTTTCCCCCCCCCCTTTTT
TTTTTCTTCTCCCCTATTTTCTCCCCTCCTCCCCTTTCCCTCATTCTTCC
TTCTCTTTTTTTTTCCCGTTTCCTCCCCCCCCTCTTTTTTTCTTCCTCCC
TTTTCCCTCGTTCCTTTTTCCTTCCTCTCTCCCTTTTTTTTTTTTCTCCC
CTCTCCACCCCCTTTTCTCCCTTTCTCCCCCCTTTTTTTCCCCCCCCCTC
CTTCTCCTCCCTTCTCCTCTTTTTTTTCCCCACCCCTCCTTTTTTCTTCT
CCCTTTTCTTTTCATCCCTCCCCCCCACTCCCCCCTCCTTTTTTCTTTTT
TTGTTCCTTTTCACTTCTTTCCTTCCCTTCTTCTCACCTATTTCTTCCCC
CACCTTCTCTCTCTTTTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_g22.b1 MSMg01no435_g22.b1 CHROMAT_FILE:
MSMg01no435_g22.b1 PHD_FILE: MSMg01no435_g22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:10 2005
         (437 letters)



>mm_chr3_86294010_86294846
          Length = 837

 Score =  812 bits (420), Expect = 0.0
 Identities = 429/432 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcctatttcaatagctgttatcaagactgtagatatgatcagtgctaaaggggtgc 65
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gaattcctatttcaaaagctgttatcaagactgtagatatgatcagtgctaaaggggtgc 578

                                                                       
Query: 66  aactatttttgagtctccatgaactaaactacagaataaatgagcatatttacatacaaa 125
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 577 aactatttttgagtctccatgaactaaactacagaataaatgagcatatttatatacaaa 518

                                                                       
Query: 126 gttttatatttatatttatctacagtcatctatttatttaatatcagtataattccagtt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gttttatatttatatttatctacagtcatctatttatttaatatcagtataattccagtt 458

                                                                       
Query: 186 tcctgtcttgttatttataacccccataattaaagaataatttagttctcattcataacc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tcctgtcttgttatttataacccccataattaaagaataatttagttctcattcataacc 398

                                                                       
Query: 246 tatatactgatttgacctatctttgtaaacatgaccaaagtcccaccatacacagatgac 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tatatactgatttgacctatctttgtaaacatgaccaaagtcccaccatacacagatgac 338

                                                                       
Query: 306 ctatccaaccagtatctcctgctgagacttctccgtgaatattttctaaacagtactcag 365
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 337 ctatccaaccagtatctcctgctgagacttctccgtgaatattttctaaacactactcag 278

                                                                       
Query: 366 gctctggcaatccaggccaggcctccatcctccccagcaaagcctgcaacagtacacata 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gctctggcaatccaggccaggcctccatcctccccagcaaagcctgcaacagtacacata 218

                       
Query: 426 aataggtcttgc 437
           ||||||||||||
Sbjct: 217 aataggtcttgc 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no435_g22.g1 MSMg01no435_g22.g1 CHROMAT_FILE:
MSMg01no435_g22.g1 PHD_FILE: MSMg01no435_g22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:10 2005
         (198 letters)



>mm_chr3_86129848_86130445
          Length = 598

 Score =  383 bits (198), Expect = e-111
 Identities = 198/198 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatatactaaatcttatttttaagatcatgtcatcagagtaaaggattttcagaattgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttatatactaaatcttatttttaagatcatgtcatcagagtaaaggattttcagaattgc 260

                                                                       
Query: 61  aagtactttttgtgtggggaggagttctagttacccgctgtgctgcttctgtgtgtagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtactttttgtgtggggaggagttctagttacccgctgtgctgcttctgtgtgtagtg 320

                                                                       
Query: 121 tgccacatcatagctttttttttttttaaaagaactttaaaaaatttttatattctatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgccacatcatagctttttttttttttaaaagaactttaaaaaatttttatattctatat 380

                             
Query: 181 tattgattgtttgactgg 198
           ||||||||||||||||||
Sbjct: 381 tattgattgtttgactgg 398


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 598
Length adjustment: 8
Effective length of query: 190
Effective length of database: 590
Effective search space:   112100
Effective search space used:   112100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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