Query= MSMg01no436_b15.b1 MSMg01no436_b15.b1 CHROMAT_FILE:
MSMg01no436_b15.b1 PHD_FILE: MSMg01no436_b15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:05 2005
(455 letters)
>mm_chr3_115753737_115754590
Length = 854
Score = 822 bits (425), Expect = 0.0
Identities = 448/457 (98%), Gaps = 5/457 (1%)
Strand = Plus / Plus
Query: 1 gtgaagaggctgccaagcaccttacctgtggagctcattcgagcagctctcccggttccc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 gtgaagaggctgccaagcaccttacctgtggagctcattcgagcagctctcc-ggttccc 259
Query: 61 ccactgtgatctcctctgtaaactggaattatagagtctttcttcccagagatccagaca 120
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 260 ccactgtgatctcctctgtaaactggaattacag--tctttcttcccagagatccagaca 317
Query: 121 gggacagatacccagagaactcttttgaaagtaaactatgcaaggaagtgagctttttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gggacagatacccagagaactcttttgaaagtaaactatgcaaggaagtgagctttttat 377
Query: 181 gctctgtcaaagaatcttggctgcttttctctcaggatggaaggacggacatcccctgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gctctgtcaaagaatcttggctgcttttctctcaggatggaaggacggacatcccctgtg 437
Query: 241 tgtgaattaatcgatagaagaactagtctctcattgttgcagagactagactaagacagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tgtgaattaatcgatagaagaactagtctctcattgttgcagagactagactaagacagt 497
Query: 301 gttagatgataactttgacagacagg--ataatatttagaaaagccctcaatactaaata 358
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 498 gttagatgataactttgacagacaggggataatatttagaaaagccctcaatactaaata 557
Query: 359 caatttagaagcaaatctaactacacagcagcatttcctcagaagacaaaaaggatgggg 418
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 558 caatttagaagcaagtctaactacacagcagcatttccttagaagacaaaaaggatgggg 617
Query: 419 ttggggtaggtagggatgtagtctcttgcattcttgt 455
|||||||||||||||||||||||| ||||||||||||
Sbjct: 618 ttggggtaggtagggatgtagtcttttgcattcttgt 654
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 854
Length adjustment: 10
Effective length of query: 445
Effective length of database: 844
Effective search space: 375580
Effective search space used: 375580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no436_b15.g1 MSMg01no436_b15.g1 CHROMAT_FILE:
MSMg01no436_b15.g1 PHD_FILE: MSMg01no436_b15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:05 2005
(480 letters)
>mm_chr3_115930013_115930896
Length = 884
Score = 847 bits (438), Expect = 0.0
Identities = 470/484 (97%), Gaps = 8/484 (1%)
Strand = Plus / Minus
Query: 1 aggtactttgaaataacaatacaagctcttagcctatgagccatctctcctgcgcctggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 aggtactttgaaataacaatacaagctcttagcctatgagccatctctcctgcgcctggt 527
Query: 61 tttgacaatcgcctgtgggcctgcattacgtcattcttg---aaaaaaaagctgcaattt 117
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 526 tttaacaatcgcctgtgggcctgcattacgtcattcttgaaaaaaaaaaagctgcaattt 467
Query: 118 ttccccatgtaaatgaaagctaaatttaattgtttttttttaagggaaaacatttggttt 177
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 466 ttccccatgtaaatgaaagctaaatttaattttttttttttaagggaaaacatttggttt 407
Query: 178 tgatatttttacatgactaatccattgcagtggatactatcaagtatatttttggaat-a 236
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 406 tgatatttttacatgactaatccattgcagtggatactatcaagtatatttttggaataa 347
Query: 237 aaaaacccaattatttatctagacaaagtataaaatgttttcacagaactggatcgcttt 296
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 346 aaaaacccaattatttatctagacaaagtataaaatgttttcacagaactgcatcgcttt 287
Query: 297 cacaaatatgtcgcatcagccattgcttggagcaatcctatcctacaggaatgtttgtgt 356
|||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 286 cacaaatacgttgcatcagccattgcttggagcaatcctatcatacaggaatgtttgtgt 227
Query: 357 tttacattgtaatttctgaaacacacaatttttttttttttttttttactcccaggaaaa 416
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 226 tttacattgtaatttctgaaacacacaa----tttttttttttttttactcccaggaaaa 171
Query: 417 ctggtcaaccatagcggttataagtgtaggatatgtgtatttagataaatacacataatc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 ctggtcaaccatagcggttataagtgtaggatatgtgtatttagataaatacacataatc 111
Query: 477 taat 480
||||
Sbjct: 110 taat 107
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 884
Length adjustment: 10
Effective length of query: 470
Effective length of database: 874
Effective search space: 410780
Effective search space used: 410780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
