BAC Information

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BAC

Clone NameMSMg01-436B24
Chromosome3 (Build37)
Map Location 134,862,557 - 135,034,655
singlet/doubletdoublet
Overlap geneEG620439, Cenpe, Bdh2, C80638, 4933425K02Rik
Upstream geneLOC100039199, Cxxc4, Ppia-ps3_1390.1, LOC100039234, Tacr3, LOC229837, LOC100039290
Downstream geneZcd2, Ube2d3, Manba, LOC668745, Nfkb1, ENSMUSG00000045520, Slc39a8, LOC100039350, LOC383923, Bank1, LOC100039477, LOC668868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436B24.T7 (MSMg01no436_b24.b1)MSMg01-436B24.TJ (MSMg01no436_b24.g1)
ACCAG527267AG527268
length780779
length of high quality
(start - end)		501 (46 - 546)443 (73 - 515)
definitionCHROMAT_FILE: MSMg01no436_b24.b1 PHD_FILE: MSMg01no436_b24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:07 2005CHROMAT_FILE: MSMg01no436_b24.g1 PHD_FILE: MSMg01no436_b24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,034,259 - 135,034,655)(134,862,557 - 134,862,999)
sequence
GTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTACTAACTATATCAATATGCAGACTAACATAGCTACTCACAATGT
TGATTAATATTACATCCTGGCATAACTGAAGGATAGTCGTTAAGATATAT
TTCAGAGGCCCTATCAGTTTATAGGACAAGTCTTAAACAATTTTCTGAAA
GCATTTTAAGGAGCCAGGTAAAAGTACTTGCCATAAAGCCTGATGATTTA
TGCCAATCTCTGAAACCCATGTAAATACTGAAGGAGAAAATCAGAACCCA
CGCCACAAGACTGTTTGCTGGACTTAGCATATGTTCCATGGCACATGTGT
CCTCTCATTACACATTCATGTGCATACACGCATGCACACACATACATGTG
CCCCAAGAGAGACAGGGAAATACAACATTTCAAACTCTATGTGAATGTTT
TTCATTGTAGTAGAACTCAACCTATGACCTCACACATGTTGAGCAAGATA
TCTACACTCAATGGTATCCCTGAACTCTGTAAGGCACTAAAGGTTTCTTG
TAATAGCTTAGCATTTCTCTGTTCCTTTCCGGGCTTACGGNAGGGTTTGG
CTTTGTCACCTAGGCAGGCTTTCAAGTGTCCTCTTTTACCTCTGCCCCCA
ACAAGTGTCATGATGGGCCCCCCCAATAAAGCTAAGCCTTTAAAAAATGT
TTTGACCCCCTGGGGGAATTATTTTTAAGTTTAAAAACAACCGGGACGGG
GGGGGGAACAATTTCCTCCCCTAATTCTTC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTTCTTTTATGCAGTAGTGGGATAGTG
GGATTTGAACTTGGGGAAGATGGCGGCCCTTCACTTACTTTAGGCAAGAG
CTCTGTATCCCCAACCTCCTCTTAAATTTTTACTTTTATTATTTTTATCC
TATTATTATTAACTTTTACATTTCTATTAACTCTTTGATAATTTCATAAA
ATTTGATAATATTCACACTCCCTCCCTACCTCCCCTCCTGCCAACTTTGT
TTCTTAAGAAACAGGCATCACTAAGTAGCCCAGGCAAACAAGGCATTTGT
TGCATAGTTATATGTGATCTGCCTGCCTCAGAAACATCTGAAAACACAGG
CCTGCACCTCTGAGCACAGCTGAGCAAGCTCTCTGTCTGGGCTACATTCA
TCTTTGAATTTGGTAAGGCTTGATTGTGTACACTAGGCCGATGCTGGGCA
CAGAGCTGGCCACAATGACATCGTGGTTTACAGCGAGAAAAGCTAATCGC
TTGCCTTTTNCGTCATATGCGTACCTCCTGGTGTTCAGGGGGGTTTATGT
GGTCGGCAAAATTCAGTTCGGTTTCTTCCGCGAAATTTTTTTGGGGAACG
GTTTATGATATAGGTTCGGCCACCCGCCGATTACATATTTTCTCGGACTT
TTTTAATGTATGTTGGTGGCCCCTTCTTTTTATAAATATATTTTAATCCG
TGCCCACCACCTGGTGTTTGGCTAACCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_b24.b1 MSMg01no436_b24.b1 CHROMAT_FILE:
MSMg01no436_b24.b1 PHD_FILE: MSMg01no436_b24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:07 2005
         (501 letters)



>mm_chr3_135033755_135034655
          Length = 901

 Score =  737 bits (381), Expect = 0.0
 Identities = 393/397 (98%)
 Strand = Plus / Minus

                                                                       
Query: 105 tttcagaggccctatcagtttataggacaagtcttaaacaattttctgaaagcattttaa 164
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 tttcagaggccctatcagtttataggacaagtcttaaacaattttctgaaagcattttaa 842

                                                                       
Query: 165 ggagccaggtaaaagtacttgccataaagcctgatgatttatgccaatctctgaaaccca 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ggagccaggtaaaagtacttgccataaagcctgatgatttatgccaatctctgaaaccca 782

                                                                       
Query: 225 tgtaaatactgaaggagaaaatcagaacccacgccacaagactgtttgctggacttagca 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tgtaaatactgaaggagaaaatcagaacccacgccacaagactgtttgctggacttagca 722

                                                                       
Query: 285 tatgttccatggcacatgtgtcctctcattacacattcatgtgcatacacgcatgcacac 344
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 721 tatgttccatggcacatgtgtcctctcattacacattcatgtgcatacacgcgtgcacac 662

                                                                       
Query: 345 acatacatgtgccccaagagagacagggaaatacaacatttcaaactctatgtgaatgtt 404
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 atatacatgtgccccaagagagacagggaaatacaacatttcaaactctatgtgaatgtt 602

                                                                       
Query: 405 tttcattgtagtagaactcaacctatgacctcacacatgttgagcaagatatctacactc 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tttcattgtagtagaactcaacctatgacctcacacatgttgagcaagatatctacactc 542

                                                
Query: 465 aatggtatccctgaactctgtaaggcactaaaggttt 501
           |||||||||||| ||| ||||||||||||||||||||
Sbjct: 541 aatggtatccctaaacactgtaaggcactaaaggttt 505


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no436_b24.g1 MSMg01no436_b24.g1 CHROMAT_FILE:
MSMg01no436_b24.g1 PHD_FILE: MSMg01no436_b24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:07 2005
         (443 letters)



>mm_chr3_134862357_134863199
          Length = 843

 Score =  833 bits (431), Expect = 0.0
 Identities = 440/443 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttcttttatgcagtagtgggatagtgggatttgaacttggggaagatggcggcccttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttcttttatgcagtagtgggatagtgggatttgaacttggggaagatggcggcccttc 260

                                                                       
Query: 61  acttactttaggcaagagctctgtatccccaacctcctcttaaatttttacttttattat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttactttaggcaagagctctgtatccccaacctcctcttaaatttttacttttattat 320

                                                                       
Query: 121 ttttatcctattattattaacttttacatttctattaactctttgataatttcataaaat 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 ttttatcctattattattaacttttatatttctattaactctttgataatttcataaaat 380

                                                                       
Query: 181 ttgataatattcacactccctccctacctcccctcctgccaactttgtttcttaagaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgataatattcacactccctccctacctcccctcctgccaactttgtttcttaagaaac 440

                                                                       
Query: 241 aggcatcactaagtagcccaggcaaacaaggcatttgttgcatagttatatgtgatctgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggcatcactaagtagcccaggcaaacaaggcatttgttgcatagttatatgtgatctgc 500

                                                                       
Query: 301 ctgcctcagaaacatctgaaaacacaggcctgcacctctgagcacagctgagcaagctct 360
           ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 501 ctgcctcagaaacatctgaaaacgcaggcctgcacctctgagaacagctgagcaagctct 560

                                                                       
Query: 361 ctgtctgggctacattcatctttgaatttggtaaggcttgattgtgtacactaggccgat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgtctgggctacattcatctttgaatttggtaaggcttgattgtgtacactaggccgat 620

                                  
Query: 421 gctgggcacagagctggccacaa 443
           |||||||||||||||||||||||
Sbjct: 621 gctgggcacagagctggccacaa 643


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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