BAC Information

Click to search

BAC

Clone NameMSMg01-436E10
Chromosome3 (Build37)
Map Location 49,689,230 - 49,893,783
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18
Downstream geneLOC100039628, LOC639469, Slc7a11, EG621304, LOC100039667
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436E10.T7 (MSMg01no436_e10.b1)MSMg01-436E10.TJ (MSMg01no436_e10.g1)
ACCAG527382AG527383
length772767
length of high quality
(start - end)		507 (72 - 578)245 (76 - 320)
definitionCHROMAT_FILE: MSMg01no436_e10.b1 PHD_FILE: MSMg01no436_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:18 2005CHROMAT_FILE: MSMg01no436_e10.g1 PHD_FILE: MSMg01no436_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,893,277 - 49,893,783)(49,689,230 - 49,689,472)
sequence
NTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCG
GAATTCTTCTCACTGTTCAAACCAGAGGCTGTTTCATGTTCCTCTGTCTC
ATCCTTTATAACAACTTCATATTTTTAATTTTACAAATGTTATTTGTAAA
AGAAAATCTTGCAAATGAATAAAAAACATCACTCACCAAAACTCACCCTC
CGCCAGCCTATAAAATGTTGTGGTCTTGTACATAGCTTGAGTTGGCACTC
AGAATGGGAGCTCAGAAGCTTCCATTGAGTTTAACACTTACAGAATTGAA
CATATTTTATGCATTTACTCAACTCCAACATAGAAAAGCCCAGGACAAGA
GGAACAACCTGCTTTATGTCCTCCATCATAACTTGCACATAGGAAAGGCC
GGCCATGAAGAAAAGAGTGCACACAGCCTTTGGAAAATGGAAAGGCAAGA
AAAGGTACTGTCCTGGGGATCTCAGAAGGGCAAACCCTTTCTACATCTTT
GCAGTAGCCCAGGAAGGAAGAGGATAACTCACTTTACATTGTTTTAATTG
GTTATATTTGTCTTTGGAGGGTGTTTTGTTAAAGACACATAGTCACCCCT
AAAAACAGGTAGTCACTAATATAACATTCATTTTTGTAAAACACTTTTCA
ACTTTTTGATGAAATTCCTGCTTTTTATTAATTTTTTTCCGTCTTGAAAG
ACGTAAAAAAATATTTTTGCCTTAAGTTAAATTTTTCTTCAACCACTTTT
ATTTTCACCTACTCTAATCCTG

TCGATGACTAGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTTT
TAATGGGGTTATTTGATTTTTTTGGAGTCCACCTTCTTGAGTTCTTTATA
TAATTTTTTAAAAAGGGAAAAAAAAACAAAGAAAACATAGCAGCTCTTGG
TAGAGTTGGGCTTGTTTCTAAGATGTCTATGTCATCTTATGTCTCAGCAG
TCACAGGACAGCAGCAACAACTTTTATATGTGGGAACTGTGTGGTTTTTC
TATCGTCCTAGAACATAATTTTTTTGTCTTGTTCAATAGTCTTGGCAGGT
GCTTTCTTTGGCTTTTAGGAATATGACTTCATTTGATGGATATATTTTTA
GTTCCCCCTGGGAAGTTGCAAAGTGGAATTACTTTCTTGTCTTCCTATTT
GTTATTTTTATGGCAGGCCCTTAGCTATAGATAACTGTTTGCCTGGGATA
AATAGCCCTGTCAGATGAGTATGATCTTATGCAGTTAGCACTGAGAGTTT
TTTCTTTTTTAGCCCTGATCTTTTGATGTTTCGATAATAACTCCTGCGAA
TTCTCTTCAACCTTCTATGATACTACTCACTCATATCCTAACAATATTGC
TGCGTATCTTTTTTGGTATTATCTTCCACTACACTTACTTTTCCTGTGGT
TCTGCGACATTCCCTTTATTTCTATTTCGCCGCCGTACTGAATTCTCCTC
TTCTTTGAATACCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_e10.b1 MSMg01no436_e10.b1 CHROMAT_FILE:
MSMg01no436_e10.b1 PHD_FILE: MSMg01no436_e10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:18 2005
         (507 letters)



>mm_chr3_49893265_49894171
          Length = 907

 Score =  980 bits (507), Expect = 0.0
 Identities = 507/507 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccagaggctgtttcatgttcctctgtctcatcctttataacaacttcatatttttaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ccagaggctgtttcatgttcctctgtctcatcctttataacaacttcatatttttaattt 460

                                                                       
Query: 61  tacaaatgttatttgtaaaagaaaatcttgcaaatgaataaaaaacatcactcaccaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tacaaatgttatttgtaaaagaaaatcttgcaaatgaataaaaaacatcactcaccaaaa 400

                                                                       
Query: 121 ctcaccctccgccagcctataaaatgttgtggtcttgtacatagcttgagttggcactca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ctcaccctccgccagcctataaaatgttgtggtcttgtacatagcttgagttggcactca 340

                                                                       
Query: 181 gaatgggagctcagaagcttccattgagtttaacacttacagaattgaacatattttatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gaatgggagctcagaagcttccattgagtttaacacttacagaattgaacatattttatg 280

                                                                       
Query: 241 catttactcaactccaacatagaaaagcccaggacaagaggaacaacctgctttatgtcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 catttactcaactccaacatagaaaagcccaggacaagaggaacaacctgctttatgtcc 220

                                                                       
Query: 301 tccatcataacttgcacataggaaaggccggccatgaagaaaagagtgcacacagccttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 tccatcataacttgcacataggaaaggccggccatgaagaaaagagtgcacacagccttt 160

                                                                       
Query: 361 ggaaaatggaaaggcaagaaaaggtactgtcctggggatctcagaagggcaaaccctttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 ggaaaatggaaaggcaagaaaaggtactgtcctggggatctcagaagggcaaaccctttc 100

                                                                       
Query: 421 tacatctttgcagtagcccaggaaggaagaggataactcactttacattgttttaattgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  tacatctttgcagtagcccaggaaggaagaggataactcactttacattgttttaattgg 40

                                      
Query: 481 ttatatttgtctttggagggtgttttg 507
           |||||||||||||||||||||||||||
Sbjct: 39  ttatatttgtctttggagggtgttttg 13


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no436_e10.g1 MSMg01no436_e10.g1 CHROMAT_FILE:
MSMg01no436_e10.g1 PHD_FILE: MSMg01no436_e10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:18 2005
         (245 letters)



>mm_chr3_49689030_49689674
          Length = 645

 Score =  470 bits (243), Expect = e-137
 Identities = 243/243 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtttagctctgagccccatttttaatggggttatttgatttttttggagtccacctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtttagctctgagccccatttttaatggggttatttgatttttttggagtccacctt 260

                                                                       
Query: 61  cttgagttctttatataattttttaaaaagggaaaaaaaaacaaagaaaacatagcagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgagttctttatataattttttaaaaagggaaaaaaaaacaaagaaaacatagcagct 320

                                                                       
Query: 121 cttggtagagttgggcttgtttctaagatgtctatgtcatcttatgtctcagcagtcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttggtagagttgggcttgtttctaagatgtctatgtcatcttatgtctcagcagtcaca 380

                                                                       
Query: 181 ggacagcagcaacaacttttatatgtgggaactgtgtggtttttctatcgtcctagaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggacagcagcaacaacttttatatgtgggaactgtgtggtttttctatcgtcctagaaca 440

              
Query: 241 taa 243
           |||
Sbjct: 441 taa 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |