BAC Information

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BAC

Clone NameMSMg01-436G09
Chromosome3 (Build37)
Map Location 80,898,387 - 80,898,823
singlet/doubletsinglet
Overlap genePdgfc
Upstream geneEG626797, Gria2, Glrb, EG626841
Downstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436G09.T7 (MSMg01no436_g09.b1)MSMg01-436G09.TJ (MSMg01no436_g09.g1)
ACCAG527476AG527477
length741753
length of high quality
(start - end)
441 (95 - 535)434 (111 - 544)
definitionCHROMAT_FILE: MSMg01no436_g09.b1 PHD_FILE: MSMg01no436_g09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:27 2005CHROMAT_FILE: MSMg01no436_g09.g1 PHD_FILE: MSMg01no436_g09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCCCAAGGAGGGG
CGGAATTCAAAATGATTCCTAGTAGAGTTAAGTAATAACTGACTGGATCT
AACCATGCAGCTCTCGCCAAGCTGTGGACTCAAGAGGCACTCTTGGTCAC
GCTTTACTGCATATATCACCATGACAATTTCATTTGAACAAAGAGATCTA
TCCATGTAGCTGGGTAGATATGACTAGTAGGTGCATCTGGGAGGGTGTTG
TTGGCAAAGATGAACGTTTACATCGAGAGGCTGAGGAAAACACTAATATT
TTTGGCACACAAAACCTAAAATCATTTTATATGTCATTTTTCACCACAGT
TTTCAGAAAGGTAGCTCAAAAGTCTATTCATACATTACACATTTGCTACC
ACATATGTTTTATGTAATATAAAAAGACTTCGACAAAGAGTAAACAAAGG
AAAACCAAAATGTGTTTAAAGCTAACTAATAACTAATTGTGATTGTACAA
TACATACACAATTAAATGGTTTGATCAACTTATAAGCAGAAAAGATAGAG
TCTCTCAATGTGAAAAACAAATAAGGAAGACACTATGACCAAATCTAGTC
TGGAACTTGGAAACTGATGTGGGTTTTGAGAGTAAAGATAAAAAAACCTG
TCCTACCGATACTGGATAATCAAAACTTCCATATGGAGGCATGGAAACTG
ACAGTGAGTGATATGTATGACTGGTAATAAATATTTCAATA
NCACGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGACTAATACAGATGCAGATAC
TCACAGCCAGATATTGAACTGAGCCCATGGACCCCAATGGAAGAGCTAAG
GAAAGGGCTGAAGGAGGGGAAGGGGATTACAACCCTATAGGAAGAACAAT
ATCTACTAACCAGGCCTCCATGAGCTCCCAGGAACTAAACCACCAACCAA
AGAGTATACATGGAGGGACCCATGGCTCTTGATGCATATGAAGAAGAGGA
TAGCCTTATCTAGCATTAATGAAAGGGCAGGTCTTGTGGAAACATAAAAG
GATTCTTGAGAACATAAATGATTAAATGAATGTATAATCAACATGAAAGA
AATCATCAAGGAAAGCTTTAGGATTGTTTTTATTGATTATTTGGGAAGTT
TACAACAGGAACCCCAATAATACTCACTTTTCAGTCCTTCCATGCCTGTG
CATGGAAGAGGAGAAGGAAAAGGAGAAAAAGAAGAAAAAGGGAAGAACAA
GGAAGAGGAGAAGCAGGGAGAGGAGGAAGAGACAGAGGAGGAGGAGGGAG
AGGAGTAGCATTTTTCTTCTCTTCTCTCGCCTCCCTCTCCCTTCTGTATT
TAAGTCTTCCCCTCCTCTTCTTTTTTTTTTCCCTGTCTTCTTCTTTATCT
TTTATATCTTGCTGACTCTCCCTTCCTTCTTATCTTTGTCTCCTCTCTCG
CTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_g09.b1 MSMg01no436_g09.b1 CHROMAT_FILE:
MSMg01no436_g09.b1 PHD_FILE: MSMg01no436_g09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:27 2005
         (441 letters)



>mm_chr3_80898187_80899026
          Length = 840

 Score =  739 bits (382), Expect = 0.0
 Identities = 424/438 (96%), Gaps = 1/438 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggatctaaccatgcagctctcgccaagctgtggactcaagaggcactcttggtcacgctt 60
           ||||| |||||||||||||||||||||||||||||||||||  |||||||||||||  ||
Sbjct: 637 ggatcaaaccatgcagctctcgccaagctgtggactcaagattcactcttggtcacattt 578

                                                                       
Query: 61  tactgcatatatcaccatgacaatttcatttgaacaaagagatctatccatgtagctggg 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 577 tactgcatatatcaccatgacaacttcatttgaacaaagagatctatccatgtagctggg 518

                                                                       
Query: 121 tagatatgactagtaggtgcatctgggagggtgttgttggcaaagatgaacgtttacatc 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 517 tagatatgactagtaggtgcatctggtagggtgttgttggcaaagatgaacctttacatc 458

                                                                       
Query: 181 gagaggctgaggaaaacactaatatttttggcacacaaaacctaaaatcattttatatgt 240
            |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 457 aagaggctgagtaaaacactaatatttttggcacataaaacctaaaatcattttatatgt 398

                                                                       
Query: 241 catttttcaccacagttttcagaaaggtagctcaaaagtctattcatacattacacattt 300
           || ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 397 ca-ttttccccacagttttcagaaaagtagctcaaaagtctattcatacattacacattt 339

                                                                       
Query: 301 gctaccacatatgttttatgtaatataaaaagacttcgacaaagagtaaacaaaggaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gctaccacatatgttttatgtaatataaaaagacttcgacaaagagtaaacaaaggaaaa 279

                                                                       
Query: 361 ccaaaatgtgtttaaagctaactaataactaattgtgattgtacaatacatacacaatta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ccaaaatgtgtttaaagctaactaataactaattgtgattgtacaatacatacacaatta 219

                             
Query: 421 aatggtttgatcaactta 438
           ||||||||||||||||||
Sbjct: 218 aatggtttgatcaactta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 840
Length adjustment: 9
Effective length of query: 432
Effective length of database: 831
Effective search space:   358992
Effective search space used:   358992
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)