BAC Information

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BAC

Clone NameMSMg01-436H22
Chromosome3 (Build37)
Map Location 144,135,069 - 144,333,555
singlet/doubletdoublet
Overlap geneHs2st1, Sep15, LOC435761
Upstream geneEG668889, EG621809, LOC100039938, LOC100039952, Lmo4, LOC545572
Downstream geneSh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l, Col24a1, 2410019A14Rik, Cyr61
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436H22.T7 (MSMg01no436_h22.b1)MSMg01-436H22.TJ (MSMg01no436_h22.g1)
ACCAG527547AG527548
length775772
length of high quality
(start - end)		249 (74 - 322)480 (74 - 553)
definitionCHROMAT_FILE: MSMg01no436_h22.b1 PHD_FILE: MSMg01no436_h22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:34 2005CHROMAT_FILE: MSMg01no436_h22.g1 PHD_FILE: MSMg01no436_h22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,333,308 - 144,333,555)(144,135,069 - 144,135,548)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGG
AATTCCTACTCCTTTTCCCAGACTGTTTTGACTCCCAACCCATGCTTTTT
TGCCTCCACTAAATACTCCAGGGATGGAAACAGTTAAGAGCCCAAAGCTC
CTGCTTCTAGTGGTGAGCCCTTAGGAGGGCTGCCCAGTCAACCCTGGAAG
GTGGGTCGTGGGACCTAACAGCTCTGTAAGCAGATCCGGCCTTTTAAAGG
TCTCATGAAAGCAGATGCACACCGTTGAGGCTGCAGTCTGGGTGCTGTCT
GGTACTGATAAGGCTGCCTGGTTTTTTCCCGTCCTATCCCTACCTCGATC
CAAAGGCTCTTTGAGAGGCGGCCAAGCATGTGAGTCCAGCCAAGCAGCCC
TAAGTGCATTATCTTGTCTAAGCAAAGCATGAGAAGTAAATTAAGATGCT
CGCTGACATCACTGACTTAACAGTTAATAAAGAAGAAGAAAACAAGCAAA
CCCCCCCCCTGCTTTTACCTAATGCATGACCACTGCCCTAAAGAAAAAAC
TCTCCCTTCCCCTTAAGTTGTATTTAACTTAAGAGGAAAAAAAAAATTCT
GGGTGCTTTTGCCATTCTCATTCTGTATAGAGCCTTTTAAGTCATCTTCT
CCGGCCACTTTTGTAACCTTCCCTAAAAAAGGGATTGTCTTTACCTTAAA
TTAACTTAATACCCCTCCTTATTTATCCCTACTCCCTAAAACATTAAGGT
GCGCGTTCCCCCACGCTTATTGGTG

NCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTTCACAGAGCAGCAGCTGCACCTGG
GACTCCATTCACTAGTAAATAACAAGAATAAGGAGTAACTAGGACTCAAT
TCCAGCTGGGCTTGGGCTCATTATCGAAAACTTAATGCCGCAGCTGTTTG
GAAATTAGTGAGCATGTTGAAAGCTCTATATTTCACCAGAGTTTGAAACG
CACCACACTCCAGGGCAGAGGTTCTCCATGTGAGCCTCCGTCATGGTCTC
CAACTCACTAGCTACTCATGTATGGCCTAAGAAATGGCATATCACACTCT
CGGGAGCTGACTTTTGGTTTGATGGTCCAAGAATACCCAAGAATCAACAT
TTCCAGGCAGCATCTGTCAAAGAGTGCACTCTCATTTCTTCTTTTCCTAT
AACTAGGAGATATTCCTATTAACTTCAAGCTAAATCTAAAACCAAGGCTA
CTCATGACATCGACTGCCTTCTAATACAAAGCTCTACTTTTGGAAGCTAT
CTTATTTTCAATTATTTGGTTTATTTCTATATATTTTATATTTAAGAGGA
TGTGTCTGCATATGGTTATGTGCACATGTGTGCCGGCTGCCTGCCTAGGA
CAAGGGTTAACAAAAAAAAACTGGAATTAACAGGTTGGGGATGCCCCCCG
TAATTGTTAAAACCTCAAACATTTTTCTGGTTGAAAAAAAGGGGCCTTTT
TTGGTGAAAACCCCCCCCGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_h22.b1 MSMg01no436_h22.b1 CHROMAT_FILE:
MSMg01no436_h22.b1 PHD_FILE: MSMg01no436_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:34 2005
         (249 letters)



>mm_chr3_144333108_144333756
          Length = 649

 Score =  480 bits (248), Expect = e-140
 Identities = 248/248 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttttgactcccaacccatgcttttttgcctccactaaatactccagggatggaaacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tgttttgactcccaacccatgcttttttgcctccactaaatactccagggatggaaacag 389

                                                                       
Query: 61  ttaagagcccaaagctcctgcttctagtggtgagcccttaggagggctgcccagtcaacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ttaagagcccaaagctcctgcttctagtggtgagcccttaggagggctgcccagtcaacc 329

                                                                       
Query: 121 ctggaaggtgggtcgtgggacctaacagctctgtaagcagatccggccttttaaaggtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ctggaaggtgggtcgtgggacctaacagctctgtaagcagatccggccttttaaaggtct 269

                                                                       
Query: 181 catgaaagcagatgcacaccgttgaggctgcagtctgggtgctgtctggtactgataagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 catgaaagcagatgcacaccgttgaggctgcagtctgggtgctgtctggtactgataagg 209

                   
Query: 241 ctgcctgg 248
           ||||||||
Sbjct: 208 ctgcctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no436_h22.g1 MSMg01no436_h22.g1 CHROMAT_FILE:
MSMg01no436_h22.g1 PHD_FILE: MSMg01no436_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:35 2005
         (480 letters)



>mm_chr3_144134869_144135748
          Length = 880

 Score =  920 bits (476), Expect = 0.0
 Identities = 479/480 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttcacagagcagcagctgcacctgggactccattcactagtaaataacaagaataagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttcacagagcagcagctgcacctgggactccattcactagtaaataacaagaataagg 260

                                                                       
Query: 61  agtaactaggactcaattccagctgggcttgggctcattatcgaaaacttaatgccgcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtaactaggactcaattccagctgggcttgggctcattatcgaaaacttaatgccgcag 320

                                                                       
Query: 121 ctgtttggaaattagtgagcatgttgaaagctctatatttcaccagagtttgaaacgcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtttggaaattagtgagcatgttgaaagctctatatttcaccagagtttgaaacgcac 380

                                                                       
Query: 181 cacactccagggcagaggttctccatgtgagcctccgtcatggtctccaactcactagct 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 cacactccagggcagaggttctccatgtgagcctccatcatggtctccaactcactagct 440

                                                                       
Query: 241 actcatgtatggcctaagaaatggcatatcacactctcgggagctgacttttggtttgat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actcatgtatggcctaagaaatggcatatcacactctcgggagctgacttttggtttgat 500

                                                                       
Query: 301 ggtccaagaatacccaagaatcaacatttccaggcagcatctgtcaaagagtgcactctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtccaagaatacccaagaatcaacatttccaggcagcatctgtcaaagagtgcactctc 560

                                                                       
Query: 361 atttcttcttttcctataactaggagatattcctattaacttcaagctaaatctaaaacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttcttcttttcctataactaggagatattcctattaacttcaagctaaatctaaaacc 620

                                                                       
Query: 421 aaggctactcatgacatcgactgccttctaatacaaagctctacttttggaagctatctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaggctactcatgacatcgactgccttctaatacaaagctctacttttggaagctatctt 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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