Query= MSMg01no436_j05.b1 MSMg01no436_j05.b1 CHROMAT_FILE:
MSMg01no436_j05.b1 PHD_FILE: MSMg01no436_j05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:41 2005
(529 letters)
>mm_chr3_106344398_106345327
Length = 930
Score = 955 bits (494), Expect = 0.0
Identities = 520/530 (98%), Gaps = 5/530 (0%)
Strand = Plus / Plus
Query: 5 gaattcacagtgatcatgaaagcacatcaggcctgcacagattcaaggcagatagggtcc 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattcacagtgaccatgaaagcacatcaggcctgcacagattcaaggcagatagggtcc 260
Query: 65 actgcttaaaggtgtgcatgaaggccatccttaaccaagaagctatctgcaactgacacc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgcttaaaggtgtgcatgaaggccatccttaaccaagaagctatctgcaactgacacc 320
Query: 125 cacttgcaaaggaaaaatgagttttctctgatagcatctacccttcattggtcaagacaa 184
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 cacttgcaaaggaaaaatgagttttctctgatggcatctacccttcattggtcaagacaa 380
Query: 185 aatgaatggtatttttgttgactttctttctcgttaagctttgtttggacatgttttgtc 244
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgaacggtatttttgtagactttctttctcgttaagctttgtttggacatgttttgtc 440
Query: 245 aaactggccttttacttgcatattttggtttccgatttagtgattttatggatttattt- 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaactggccttttacttgcatattttggtttccgatttagtgattttatggatttattta 500
Query: 304 -ttttgtgtgtgt--ttgtgagtttcttgagtttttgtgtttcttaaacagagaaagaaa 360
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttttgtgtgtgtgtttgtgagtttcttgagtttttgtgtttcttaaacagagaaagaaa 560
Query: 361 ggctccggagctgggtgaatgaagaggatctgggaggagaaagtgttgtatgaaaagtat 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggctccggagctgagtgaatgaagaggatctgggaggagaaagtgttgtatgaaaagtat 620
Query: 421 attgtatgaaaaaaaaatttcaactaagattgtatcttgttatgtttatctaggtcagtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attgtatgaaaaaaaaatttcaactaagattgtatcttgttatgtttatctaggtcagtt 680
Query: 481 ggtcttgaatacttgcacacgtactcctcagcctctaaa-tagctgagac 529
||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 681 ggtcttgaatacttgcacacgtactcctcagcctctaaaatagctgagac 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 930
Length adjustment: 10
Effective length of query: 519
Effective length of database: 920
Effective search space: 477480
Effective search space used: 477480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no436_j05.g1 MSMg01no436_j05.g1 CHROMAT_FILE:
MSMg01no436_j05.g1 PHD_FILE: MSMg01no436_j05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:41 2005
(507 letters)
>mm_chr3_106522177_106523082
Length = 906
Score = 957 bits (495), Expect = 0.0
Identities = 504/507 (99%), Gaps = 1/507 (0%)
Strand = Plus / Minus
Query: 1 tgtagccaaggcaattatggaaagaggctgatatttgaggcatgcctattggcaagagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 tgtagccaaggcaattatggaaagaggctgatatttgaggcatgcctattggcaagagtc 647
Query: 61 caagtactataataataagaccatagccacatcagaagaaaatcctgggagttggatcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 caagtactataataataagaccatagccacatcagaagaaaatcctgggagttggatcat 587
Query: 121 agcatcctacatgcttattaaacaattcttgcagctctttattacaattaatgcagttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 agcatcctacatgcttattaaacaattcttgcagctctttattacaattaatgcagttta 527
Query: 181 tctcacacttaaaatctttagtcagcaacatcattattctctcactcttgaagaaacagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tctcacacttaaaatctttagtcagcaacatcattattctctcactcttgaagaaacagc 467
Query: 241 aatatgcttttctttctaacttttgatctacttggtgtgttataagggtccatttctgtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 aatatgcttttctttctaacttttgatctacttggtgtgttataagggtccatttctgtt 407
Query: 301 tattaaataaatgagttctcattccttgtttctcttattttctaaaactatttgtcccca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tattaaataaatgagttctcattccttgtttctcttattttctaaaactatttgtcccca 347
Query: 361 gctgataatatcccttcccatgattttaattactacctgttacctattattactctacaa 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 346 gctgataatatcccttcccatgattttaattactacctcttacctattattactctacaa 287
Query: 421 aatgtatacataatagcatattctaggcactgatatgtgcattataaatagacactcatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 aatgtatacataatagcatattctaggcactgatatgtgcattataaatagacactcatt 227
Query: 481 tatggcaaaaaaaaacccagtaaaatc 507
||||||||||| || ||||||||||||
Sbjct: 226 tatggcaaaaataa-cccagtaaaatc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 906
Length adjustment: 10
Effective length of query: 497
Effective length of database: 896
Effective search space: 445312
Effective search space used: 445312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
