Query= MSMg01no436_j14.b1 MSMg01no436_j14.b1 CHROMAT_FILE:
MSMg01no436_j14.b1 PHD_FILE: MSMg01no436_j14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:43 2005
(493 letters)
>mm_chr3_55454138_55455030
Length = 893
Score = 915 bits (473), Expect = 0.0
Identities = 485/489 (99%)
Strand = Plus / Plus
Query: 5 gaattctttgagtatcctgagacatatacgtatttttagaaaagcctgtgcagacatgaa 64
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgagtatcctgagacatatacatatttttagaaaagcctgtgcagacatgaa 264
Query: 65 tgctaagatggtatggctcccattgaatagaactaatttctatctcaaactgtctggatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgctaagatggtatggctcccattgaatagaactaatttctatctcaaactgtctggatt 324
Query: 125 atacaatataacactgcatgcatgtgcatgcccgtatgcctgtatatgtgcatctgtgtg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atacaatataacactgcatgcatgtgcatgcccgtatgcctgtatatgtgcatctgtgtg 384
Query: 185 tttagagacctaagtatttcttcaattcataaattttataggtaaaatatttcaacatat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttagagacctaagtatttcttcaattcataaattttataggtaaaatatttcaacatat 444
Query: 245 taaattagactaataagattttttcctgatatattgtaaatgtgtaatttaagtcaacaa 304
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 445 taaattagactaataagattttttcctgagatattgtaaatgtgtaatttaagtcaacaa 504
Query: 305 ggagaagcacaatatttactaccatcattactctattaccatgctagtttcccctacaat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggagaagcacaatatttactaccatcattactctattaccatgctagtttcccctacaat 564
Query: 365 catgtgcaatttggtgcacataaaagtgaaataggaagcccactgctgagcatggaagga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 catgtgcaatttggtgcacataaaagtgaaataggaagcccactgctgagcatggaagga 624
Query: 425 gcacaggtatgctgtagatggcccttgacacagtgctgcggttagttgcatctccatcta 484
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 625 gcgcaggtatgctgtagatggcccttgacacagtgctgcggctagttgcatctccatcta 684
Query: 485 caattctca 493
|||||||||
Sbjct: 685 caattctca 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space: 426489
Effective search space used: 426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no436_j14.g1 MSMg01no436_j14.g1 CHROMAT_FILE:
MSMg01no436_j14.g1 PHD_FILE: MSMg01no436_j14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:43 2005
(493 letters)
>mm_chr3_55625788_55626680
Length = 893
Score = 891 bits (461), Expect = 0.0
Identities = 492/517 (95%), Gaps = 24/517 (4%)
Strand = Plus / Minus
Query: 1 ttgataatcatgattaccgccgggcatggtggcacacgcctttaatctctgcacttggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 ttgataatcatgattaccgccgggcatggtggcacacgcctttaatctctgcacttggga 824
Query: 61 ggcagagacagccgaatttctgagtttgaggccagcctggtctacagagtgagttccagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 ggcagagacagccgaatttctgagtttgaggccagcctggtctacagagtgagttccagg 764
Query: 121 acagccagggttacacagagaaaccctgtctcg---------------------aaaaaa 159
||||||||||||||||||||||||||||||||| ||||||
Sbjct: 763 acagccagggttacacagagaaaccctgtctcgaaaaaaacaaaacaaaaaaacaaaaaa 704
Query: 160 aaca---aaaaaaaaaaaaggtaatcatgattaccatgatacttgataatcttaattatc 216
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 aacaaacaaaaaaaaaaaaggtaatcatgattaccatgatacttgataatcttaattatc 644
Query: 217 acacaagtggaagaccaggtgatcatgtatatatttagtaatcttaattatcttaagata 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 acacaagtggaagaccaggtgatcatgtatatatttagtaatcttaattatcttaagata 584
Query: 277 attataatcctaataatcttaattaatactcaagtggaagataataatcttaattatcac 336
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 583 attataatcctaataatcttaattaatactcaagtagaagataataatcttaattatcac 524
Query: 337 acaagtggaagaccaggtgatcatgtgtatatttagtaaagtatctctttgttctgactc 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 acaagtggaagaccaggtgatcatgtgtatatttagtaaagtatctctttgttctgactc 464
Query: 397 taatcttttatctgttctcttgaataatttttattgctaaatatacaagttttgctttaa 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 taatcttttatctgttctcttgaataatttttattgctaaatatacaagttttgctttaa 404
Query: 457 catgtaaattcagtcttcagtctagtttatgaaacct 493
|||||||||||||||||||||||||||||||||||||
Sbjct: 403 catgtaaattcagtcttcagtctagtttatgaaacct 367
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space: 426489
Effective search space used: 426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
