Query= MSMg01no436_m08.b1 MSMg01no436_m08.b1 CHROMAT_FILE:
MSMg01no436_m08.b1 PHD_FILE: MSMg01no436_m08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:56 2005
(550 letters)
>mm_chr3_127107521_127108470
Length = 950
Score = 1027 bits (531), Expect = 0.0
Identities = 543/547 (99%)
Strand = Plus / Plus
Query: 4 ggaattcatgctttattcccctttcttggctcctctctgctgtaatctaaagtttgctat 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatgctttatttccctttcttggctcctctctgctgtaatctaaagtttgctat 263
Query: 64 atgttatcatttggaggggtccttaacgatgtcaccatttagaaatgtcacacatccagc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atgttatcatttggaggggtccttaacgatgtcaccatttagaaatgtcacacatccagc 323
Query: 124 cctttgtttctaagctagagcgcacagactgtttaaacagtatgccaattattcttgcta 183
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cctttgtttctgagctagagcgcacagactgtttaaacagtatgccaattattcttgcta 383
Query: 184 ggactactcaaagccaggaggatgaatttctcccaacatatcacttagcttaatatctag 243
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggagtactcaaagccaggaggatgaatttctcccaacatatcacttagcttaatatctag 443
Query: 244 aatgaaaagagcccctcactgcaccagtaatagttggtatttacacaacaaacaatcaga 303
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 444 aatgaaaagagcccctcactgcaccagtaaaagttggtatttacacaacaaacaatcaga 503
Query: 304 ggacctctgtattgaaatcaaggttcctataagcggtaattgaataacatgcaacttaat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggacctctgtattgaaatcaaggttcctataagcggtaattgaataacatgcaacttaat 563
Query: 364 tttgtgtttgttgtttttatgtacacttagacgaattacatgtgacactgattcatattt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tttgtgtttgttgtttttatgtacacttagacgaattacatgtgacactgattcatattt 623
Query: 424 atactgattgcaagtcaataaatgaatttcactctgactaaaattaggctgaatatttaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atactgattgcaagtcaataaatgaatttcactctgactaaaattaggctgaatatttaa 683
Query: 484 cagatggacattctaataacattgtggaacaacatttaattggattacttttttgtttcc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cagatggacattctaataacattgtggaacaacatttaattggattacttttttgtttcc 743
Query: 544 cctgaga 550
|||||||
Sbjct: 744 cctgaga 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no436_m08.g1 MSMg01no436_m08.g1 CHROMAT_FILE:
MSMg01no436_m08.g1 PHD_FILE: MSMg01no436_m08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:56 2005
(535 letters)
>mm_chr3_127132573_127133504
Length = 932
Score = 735 bits (380), Expect = 0.0
Identities = 391/396 (98%), Gaps = 4/396 (1%)
Strand = Plus / Minus
Query: 140 tttctttctttctttctttctttctttctttctttctttctttctttctttttttttcaa 199
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 928 tttctttctttctttctttctttctttctttctttctttctttcttt-tttttttttcaa 870
Query: 200 gacaggggacagggcttctctgtgtagccctggctgtcctgaaattctgtagatcaggct 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 gacaggggacagggcttctctgtgtagccctggctgtcctgaaattctgtagatcaggct 810
Query: 260 ggccttgaactcagaaatccgcctgcctctgcctcccaagtgctgggattaaaggtgtgc 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 809 ggccttgaactcagaaatccgcctgcctctgcctcccaagtgctgggattaaaggcgtgc 750
Query: 320 accaccactgcctggcttggtgtctggaagagctgggtccattttttttttatttttgga 379
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 749 accaccactgcctggcttggtgtctggaagagctgggtccattttttt---atttttgga 693
Query: 380 agaaatctcaccgattggatgatttataggaggagagcatagagttatcttttgtctctt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 agaaatctcaccgattggatgatttataggaggagagcatagagttatcttttgtctctt 633
Query: 440 gttctgcctgttcctagacaatagagtcaaaagtatcctacaacaaagactcctgaaaga 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 gttctgcctgttcctagacaatagagtcaaaagtatcctacaacaaagactcctgaaaga 573
Query: 500 agcatcgctaagtttgcttggagggacgtcgggcgt 535
||||||||||||||||||||||||||||||||||||
Sbjct: 572 agcatcgctaagtttgcttggagggacgtcgggcgt 537
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 932
Length adjustment: 10
Effective length of query: 525
Effective length of database: 922
Effective search space: 484050
Effective search space used: 484050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
