Query= MSMg01no436_p09.b1 MSMg01no436_p09.b1 CHROMAT_FILE:
MSMg01no436_p09.b1 PHD_FILE: MSMg01no436_p09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:10 2005
(471 letters)
>mm_chr3_120156058_120156928
Length = 871
Score = 754 bits (390), Expect = 0.0
Identities = 416/430 (96%), Gaps = 10/430 (2%)
Strand = Plus / Minus
Query: 52 tggttctcagctatgtgtcacatgctgtatatgtgtatacat------atatacatatat 105
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 679 tggttctcagctatgtgtcacatgctgtatatgtgtatacatatatacatatacatatat 620
Query: 106 aacttataagtatatattgatatgttaatatataattatacattattatctataatatgc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aacttataagtatatattgatatgttaatatataattatacattattatctataatatgc 560
Query: 166 attttattttcctgagacattttaatctagtaaggaaaataaattcctctagggtatatg 225
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 559 attttattttcctgagacattttaatctagtaaggaaaaaaaattcctctagggtatatg 500
Query: 226 gacaacacacgaagtaggaggtgatgaggctttgaagaagactaaatatatccctgggtc 285
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 499 gacaacacacgaagtaggaggtggtgaggctttgaagaagactaaatatgtccctgggtc 440
Query: 286 tcatttgtttttatgtgttagctttcttggtatttcaagaatacttagtaggtgacc--- 342
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tcatttgtttttatgtgttagctttcttggtatttcaagaatacttagtaggtgaccaaa 380
Query: 343 -aaaaaaaaaaaaaaagaactggttaagaataatccaatcacaaaaggagtcacttgata 401
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aaaaaaaaaaaaaaaaaaactggttaagaataatccaatcacaaaaggagtcacttgata 320
Query: 402 tgaattcactgataagtggatattagtccagaaacctagaatagccaagatacaatttgc 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgaattcactgataagtggatattagtccagaaacctagaatagccaagatacaatttgc 260
Query: 462 aaaacacaag 471
||||||||||
Sbjct: 259 aaaacacaag 250
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no436_p09.g1 MSMg01no436_p09.g1 CHROMAT_FILE:
MSMg01no436_p09.g1 PHD_FILE: MSMg01no436_p09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:10 2005
(511 letters)
>mm_chr3_119970040_119970950
Length = 911
Score = 919 bits (475), Expect = 0.0
Identities = 497/511 (97%), Gaps = 11/511 (2%)
Strand = Plus / Plus
Query: 1 acattgttccatataacaaaatttcttgctttttaaagtttgagaagtattcagtgaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acattgttccatataacaaaatttcttgctttttaaagtttgagaagtattcagtgaaca 260
Query: 61 cagatacccgattctctttatgcatttatttgttattagattaattttatttaacttttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagatacccgattctctttatgcatttatttgttattagattaattttatttaacttttt 320
Query: 121 gttttatatttttaggatagagtcctgctctgtgacttggcaggcttttatctcccaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttttatatttttaggatagagtcctgctctgtgacttggcaggcttttatctcccaatg 380
Query: 181 cttagttttattgatagttggtgatctattcttcagtgtatttatccttcaagatttaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttagttttattgatagttggtgatctattcttcagtgtatttatccttcaagatttaat 440
Query: 241 attgtaagtgatatgaatatataaaaattttatctgccaattaaagcaacagagaataag 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 attgtaagtgatatgaatatataaaaattttatccgccaattaaagcaacagagaataag 500
Query: 301 acaacagaggggcagagattgacctgttcacatgaaataggcttctgcctcacggcagtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaacagaggggcagagattgacctgttcacatgaaataggcttctgcctcacggcagtt 560
Query: 361 ttctgctttaattaagaaagatgtcagtagctagagctgctctgagaaagagaaggtttt 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 561 ttctgctttaattaagaaagatgtcagtagctagagctgttctgagaaagagagggtttt 620
Query: 421 attagtttggttgtttccttgattggttgggttttgttatttttgtttatctggtttttt 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attagtttggttgtttccttgattggttgggttttgttatttttgtttatctg------- 673
Query: 481 ttttttttttttttgtcattgtttacttgtt 511
|||||||||||||||||||||||||||
Sbjct: 674 ----ttttttttttgtcattgtttacttgtt 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
