Query= MSMg01no437_e09.b1 MSMg01no437_e09.b1 CHROMAT_FILE:
MSMg01no437_e09.b1 PHD_FILE: MSMg01no437_e09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:36 2005
(234 letters)
>mm_chr3_25708599_25709232
Length = 634
Score = 395 bits (204), Expect = e-114
Identities = 221/234 (94%), Gaps = 12/234 (5%)
Strand = Plus / Plus
Query: 1 aaaaatcatacaaggaaacaatgatgttgatcagtaactattagtggtctcaaataaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaatcatacaaggaaacaatgatgttgatcagtaactattagtggtctcaaataaact 260
Query: 61 gattgcttaattataaagaccacacaagactttgagacaggaaattctaggacaccaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gattgcttaattataaagaccacacaagactttgagacaggaaattctaggacaccaagg 320
Query: 121 tctttagttggcaacagtttctccctctccctccccctccaccttcccctccccctccct 180
|||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 tctttagttggcaacagtttctccctctccctccccctcc------------ccctccct 368
Query: 181 ctctcctgggtaaggtcctcagcatgagatacttctgcttgagacagacctctg 234
|||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ctctcctgagtaaggtcctcagcatgagatacttctgcttgagacagacctctg 422
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space: 140625
Effective search space used: 140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no437_e09.g1 MSMg01no437_e09.g1 CHROMAT_FILE:
MSMg01no437_e09.g1 PHD_FILE: MSMg01no437_e09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:36 2005
(499 letters)
>mm_chr3_25905645_25906543
Length = 899
Score = 903 bits (467), Expect = 0.0
Identities = 491/499 (98%)
Strand = Plus / Minus
Query: 1 atcttacatggatggcttctctgccagcagaagtcccgtagccatgctttgagcagagag 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 699 atcttacatggatggcttctctgccagcagaagtcccatagccatgctttgagcagagag 640
Query: 61 gagtatggaggcaccagacatgacagacttacctgcacacagagaagcagattgccacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 gagtatggaggcaccagacatgacagacttacctgcacacagagaagcagattgccacaa 580
Query: 121 ccattgcatgaaaccaggcaattggtaagtgcaagcttaattgaccattcctagaaatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ccattgcatgaaaccaggcaattggtaagtgcaagcttaattgaccattcctagaaatct 520
Query: 181 gttatatgtgacactgacttccctagggagaaatttttttttctttgaagaccaatatgt 240
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 519 gttatatgtgacactgacttccctggggagaattttttttttctttgaagaccaatatgt 460
Query: 241 agtttgcttttgttaaaaagtagggaaacatttatcacacacatcttccaatacaagtct 300
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 agtttgcagttgttaaaaagtagggaaacatttatcacacacatcttccaatacaagtct 400
Query: 301 ttgtggacccagcactccaattttgcctgttaccacgtggcctaaatttcactagtgttt 360
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 399 ttgtggacacagcactccaattttgcctgttaccacgtggtctaaatttcactagtgttt 340
Query: 361 cctgccctgctagcactccaattgatctctgagaattgatattgacagagcccagattac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 cctgccctgctagcactccaattgatctctgagaattgatattgacagagcccagattac 280
Query: 421 cttttaccacccaccaggcagctgaaaatgaatattttctttcaatagaaattcattttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 cttttaccacccaccaggcagctgaaaatgaatattttctttcaatagaaattcattttg 220
Query: 481 gccaaggctaattttgaga 499
|| ||||||||||||||||
Sbjct: 219 gcaaaggctaattttgaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space: 434721
Effective search space used: 434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
