BAC Information

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BAC

Clone NameMSMg01-437H23
Chromosome3 (Build37)
Map Location 109,128,161 - 109,128,346
singlet/doubletsinglet
Overlap genenone
Upstream geneSort1, Mybphl, Psrc1, Celsr2, Sars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24
Downstream geneVav3, Ntng1, LOC100043181, LOC100043183, Prmt6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437H23.T7 (MSMg01no437_h23.b1)MSMg01-437H23.TJ (MSMg01no437_h23.g1)
ACCAG528316AG528317
length1,032884
length of high quality
(start - end)
---185 (78 - 262)
definitionCHROMAT_FILE: MSMg01no437_h23.b1 PHD_FILE: MSMg01no437_h23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:54 2005CHROMAT_FILE: MSMg01no437_h23.g1 PHD_FILE: MSMg01no437_h23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTATCCACCTTTTTCCCTCTTTCCCCCTCTTTTTTTTTTCCCTCCTATT
TTTTTTATTTTTTTTTCTTTTTTCTTTTTTTCACCTATTATTATCTTTTT
NTCTTTCTCCCTCCCCCTTCTCCTTTTTTTTTTTTTCTCTTCTTTTTTCC
CCTTCCTTTACTCTCTTCTCTTTTTTATCCCCCCCCACCATCCCCACCCC
CACCCCCCCCTCCTAACGTCTCTAAGACAGATCCAGGGATGAGGGTNTTT
AATTAATCCTTTTTCCTCCCCATCCCTCATCCCCTTTTGGTTCCTCCCCC
CCGCCGGGGGCCCGTTNTCCACTTTTTCACCTCTTCCCCTCCCCCTTTCC
CCCTTTCCCCTCTATTCCTCCTTCCCTCCACCCCCTCCTCCTCCTTCTTA
TTCCCTTTTTCCCCACCCTTATATTTTTCTTTTCCCCTCTTCAACCCTTC
TTCCCACTCTATTTCTTCTTACCTCCCCTCTATTTTTCCTCTTCATTCTA
CCTTCNTTTCCACCCCTCTTTTCTCCATTACTCTCTTCCTTCCCTCTCTT
CCTCCTCCCCCTCTTTCCATCTCCTTTCTCCCCTTTCCACCCTCTTCTAT
TTCCACATATCAATCCTATATACCCACCTATCTCCACCTCTTCTCTATAC
CCTCCCTTATCACCCCTCTCCTCTTCCCTCCCTTCCCCTTTNTCTTCTTT
CTCCACATCCTCTCCCATTATTTCCCTCATCCACCACCCCCACCTACTCT
CTTATCTTCCCCTCACTCCACCCATCTCTCCCTCTCCTCAATCACCTACT
ACATCACTCACCTCCCTCTTTCTCTCTCTCTCTCTCTCTTTTCTTATATC
CCACATTCTTCTTCCCCCCTCTCCCCCTTCCCTTCCCTCCTCTTACTATC
CTTATTCCCCATAAATCTCTCCTCANACTCTTTCCCCTTCTTCACCTTTT
ACTCTACTATCCCATCAATACTCACTCCAACCCCACCCACCTCACACATC
TCCTATCTCCCCTCATACCACCCTCATTCCCG
NGGAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGAGTCAGGTGTTAGATGAAA
AAGAAAATTATTGAGAGAGAGCCAAATGGACCTGGGGAGATAACAGGGTT
AGAAGTGTGAAAAAACTACTCAGATTTCCGTATCTGGTTATTTGGAAGAA
CTGAGTTTAACAAAACAGGTCATCCTGAAGCCGGCAGAAGGTAGGAGATG
GGGAGGGAGGGTTGTCGCGTGCCCTTGCGCCGCGCCTTTTCTGCTTTCCT
GCCCCCCCCCTTCCCCTTTTCCTCTTCTTTTTTTCCTTCGTTCTCTCTTT
CTCTCTCCCCTTTCCCTTTTTTCGTTCCCCGTCTTCCCTTCCCTTTTCCC
TCCTCCTTCTCTTCTTTCCTCTCTTTCTTTCGTCCCTTTCTTTTCCTTTT
CTCCTTTTCTCCTTTCCCTTTTTTCCCCCCCTTCCCTTCCTTTCCCCTTT
TTCTTTCCTTTTCCCTCCTTCTTTTTCTCTTCTCCCTCTCTTCCCTCCTC
TTTCTTCCCCTTTTTTTTTCCTTTCTCCTTTTCTCCTCCTCCTTCTTCTC
TCTCTCCCCTCTCCTTCCCCTGTCTCTTCTTCCGCCTTCTTCTCTTCTTC
TTTATGTCCTTCTCTTCTTCCCCTCTTCTTCTTCTCCTTTCTTTCTTTCT
CCCTTCTTTTGTTTATCCCCTTTTTTTCCTCCTTCTCTCTTTTCCCCTCC
CTGTTTTCCCGTCTCCCTTCGTCTTTTCATACTCACTTTCCTCCTTCTTT
TTCTCCCCTCTTGTTATCTCCTCCCCTTTTCTCTTCTTTTCCTCCTCTTC
CTCTCCTTTTTTCTTTCTCCTCTTTTTCTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_h23.g1 MSMg01no437_h23.g1 CHROMAT_FILE:
MSMg01no437_h23.g1 PHD_FILE: MSMg01no437_h23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:54 2005
         (185 letters)



>mm_chr3_109127961_109128546
          Length = 586

 Score =  344 bits (178), Expect = 2e-99
 Identities = 184/186 (98%), Gaps = 1/186 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgagtcaggtgttagatgaaaaaga-aaattattgagagagagccaaatggacctggg 59
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 386 tctgagtcaggtgttagatgaaaaagataaattattgagagagagccaaatggacctggg 327

                                                                       
Query: 60  gagataacagggttagaagtgtgaaaaaactactcagatttccgtatctggttatttgga 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gagataacagggttagaagtgtgaaaaaactactcagatttccgtatctggttatttgga 267

                                                                       
Query: 120 agaactgagtttaacaaaacaggtcatcctgaagccggcagaaggtaggagatggggagg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 266 agaactgagtttaacaaaacaggtcatcctgaagccggcagaaggtaggaggtggggagg 207

                 
Query: 180 gagggt 185
           ||||||
Sbjct: 206 gagggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 586
Length adjustment: 8
Effective length of query: 177
Effective length of database: 578
Effective search space:   102306
Effective search space used:   102306
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)