BAC Information

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BAC

Clone NameMSMg01-437I05
Chromosome3 (Build37)
Map Location 68,947,274 - 68,947,649
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545531, LOC631379, Schip1, Il12a, LOC639530, 1110032F04Rik, Ift80, Smc4, Trim59, LOC667272, Kpna4
Downstream geneArl14, Ppm1l, LOC667309, B3galnt1, Rpl32-ps, Nmd3, LOC100041334, 1110032A04Rik, Gm414
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437I05.T7 (MSMg01no437_i05.b1)MSMg01-437I05.TJ (MSMg01no437_i05.g1)
ACCAG528328AG528329
length760758
length of high quality
(start - end)
117 (137 - 253)374 (77 - 450)
definitionCHROMAT_FILE: MSMg01no437_i05.b1 PHD_FILE: MSMg01no437_i05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:56 2005CHROMAT_FILE: MSMg01no437_i05.g1 PHD_FILE: MSMg01no437_i05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCCTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTAGGTGA
GCGGAATTCATACCTTTTGCTCAAAGAAGGNANNAGANAATATACAGTGC
AGAGAGAACATGAAAAGAATTATCCCTACACATAAACTAGATAAATAAAA
TCATAAAAGTTATATATATATATATGTATATATATATATATATATATTAC
AAAATACACTTTTATCCCAATTCTAAGATGCATCAAATGAGTGACGTTTA
GTACAATTTTGTCAGGTTTTTCTTCTAGTGTTATACTACTGTATTTGAAG
AATTATCATACACTTTTTGGCTTTTTTTTTTTATAATTACCAGTTAATTA
TATAAGCTTATTATTTTTATTACCTCTCACCAGCTAACACATAAATCTAG
CTATGCGTTTTTTTTTTCCTCCCCCCTGGACTTTATTTTCACTGACTTCA
CTATTTATCACAATAATGCTTTTTTTTTTCTCTTTTTCTTCGTTAGATTA
TTACCGATTTGTGTTGAGCGTTTGTTGACTTTTGACCATTATTTTTTTTT
CCCTTGTTCTCCCTGTGATATTTCTCTTTTTTTCCCGTCTTTCCCTATAT
GTATTATTTTTTAGTTCCCGTCCGCTATTGTCCGAGTTTACTAGTGTGTG
CCCTCTTTTTCACTGTATTTGAATGTTTTCATTTTTTACTGCTACTCTTG
TTTCATACTGGGCCTTTGCTCCATTCATCGTTACTTTTGTTTCGACTTGG
TTTTTTTTTG
NCCACGATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTCCGAAATTCATTTCTTTCTGATTTTTTTTTT
TTTTTAGAAATCGCTTACCTTTTCATGTTCAATAACTGCTTGTCTGAAGT
CTGGCTACTATATTTTCAAAATCACAGCAAATATACTTTCCCTATATAGT
TTGCTTCATTAAGTGGCTCTCTTAGAACCTAGGATATTTTCTGTAAACTT
TTTAAAATGTTGTAGACTATGTTGGGCTATGTTTCGATGGCTCATAATCC
AACACTTCATTAATGTGGTCTGAATATTTTTTTTTTTCACTTACCTTATA
CTTACCTGTACTGATGTCTCTTTTTAAACTTATTTTTGTGTATATTTAGA
ACCACTACTGATATAACTACTCTTTTTTCACACCAAAACTGTTTTTTCAA
TTTTAGAACTTCATTCCTTTTATTGAAAATATATTCTTTCCCCATACAAT
ATAACCTAATTATACTCTCCCCTCCCTCTACTCCCCCCAGTTCCTCCCTC
ACTCCACTCTCCTACAGCTCCAATCCCTTTCTGTCTCCTATTATACACTA
CTGGTTTCTTTGATATTCCCCACCCTGCACTACTTACTTTTTTTTAACGA
TTAACCCTAACTTATTTTTTTTCTTTTTTCTACTTGATTCCGCTCAATCC
GATGAAAGGTCCTCCCCCTTATCATCCCACCCACATCTCTGACACTCCCC
CTTTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_i05.g1 MSMg01no437_i05.g1 CHROMAT_FILE:
MSMg01no437_i05.g1 PHD_FILE: MSMg01no437_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:56 2005
         (374 letters)



>mm_chr3_68947074_68947853
          Length = 780

 Score =  613 bits (317), Expect = e-180
 Identities = 360/377 (95%), Gaps = 7/377 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatttctttctgattttttttttttttt---agaaatcgcttaccttttcatgttcaat 57
           |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||
Sbjct: 201 tcatttctttctgattttttttttttttttttagaaatcgcttaccttttcatgttcaat 260

                                                                       
Query: 58  aactgcttgtctgaagtctggctactatattttcaaaatcacagcaaatatactttccct 117
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactgcttgtttgaagtctggctactatattttcaaaatcacagcaaatatactttccct 320

                                                                       
Query: 118 atatagtttgcttcattaagtggctctcttagaacctaggatattttctgtaaacttttt 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatagtttgcttcattaagtggctctcttagaacctaggatattttctgtaaacttttt 380

                                                                       
Query: 178 aaaatgttgtagactatgttgggctatgtttcgatggctcataatccaacacttcattaa 237
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaatgttgtagactatgttgggctatgtttcgatggctcataatccaacacttcattaa 440

                                                                       
Query: 238 tgtggtctgaatatttttttttttcacttaccttatacttacctgtactgatgtctcttt 297
           ||||||||||||| |||||   ||||||||||||||||||||||||||||| ||| ||||
Sbjct: 441 tgtggtctgaatagtttttccattcacttaccttatacttacctgtactgaggtcacttt 500

                                                                       
Query: 298 tt---aaacttatttttgtgtatatttagaaccactactgatataactactcttttttca 354
           ||   ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttaaaatttatttttgtgtatatttagaaccactactgatataactactcttttttca 560

                            
Query: 355 caccaaaactgtttttt 371
           ||| |||||| ||||||
Sbjct: 561 cacaaaaact-tttttt 576


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 780
Length adjustment: 9
Effective length of query: 365
Effective length of database: 771
Effective search space:   281415
Effective search space used:   281415
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)