BAC Information

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BAC

Clone NameMSMg01-437J09
Chromosome3 (Build37)
Map Location 124,681,213 - 124,681,672
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817
Downstream geneLOC668820, Ndst4, Ugt8a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437J09.T7 (MSMg01no437_j09.b1)MSMg01-437J09.TJ (MSMg01no437_j09.g1)
ACCAG528383AG528384
length744783
length of high quality
(start - end)
483 (75 - 557)286 (78 - 363)
definitionCHROMAT_FILE: MSMg01no437_j09.b1 PHD_FILE: MSMg01no437_j09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:01 2005CHROMAT_FILE: MSMg01no437_j09.g1 PHD_FILE: MSMg01no437_j09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGGTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGAT
CCGCGGAATTCAAAGCTTATCTCCACCTGCACACCCATTTTTTTACACTG
TGCAGCATTTAGAAACTGTATTTCAGGTATTTTCGAATTAGTGGATAGAG
TGACACCACCAGTGGGTGACGTTAATTGGGACAGTGGCCAAATGCTCTAA
ATCAGATGATAAGGCTTAAGCTTGTTCCCATTGCATTATCATCTTTACCT
TTGTTACTTGAGTTCACATGACCATGTATCCAAAACAGGTTTAGCAGTTA
GTTTGTGCTTCAGAAGTAGAGGAGGTCTAGAGGTCTTTATTTTATTTTAT
TTTATTTTATTTTTCTTATGATATTTCATTTCATTTTATTATTTTATTTT
ATTTTAGAGGTTATGAAGATATACGCCGCAAGTCTGCAATAATTCTAATG
TGGCTTCTTGGGAATTTTCTCGATATGGGCCATTTAAGAGTCCATATCTA
GGTACATCTGACTGGTATATTGTCAGTACACACCTTGCAAGAGAGTCATC
CCTAATTATAAAGAATGGGATACTGTGAACACTAAGCTAAGCACTGCACT
CTTTTATGAGGCTGCTTTGTTAATAAAACTATCATTTATTAAGGACATGT
TGCTCATATTTCCTTCTTTGTTTACTGACTGTCCTTTTATCTCTGATTTA
TGACAATGATATCCGCTTCTTATTCCTGACGTTCTTTGTTTTTT
NAACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGGGAAGGATTAGGAAGTGTG
GTCTTTTTGCAGGAGGTATGCATGGGAGGTGGGCCTTGGGCTGTAACAGT
TCACCATCTCCCTGGTTGGTTCTCTCTTTCTGTCTTCTGATTGTGGGTCA
GATGTAAGCTCCCAGCTCCTGCCCCAGAGCTGTGCCCGATTGCCTGTTCC
TATACTCCTTACCATCATTGTCATTGATTTATGCTCTTGATCCATAAACA
ATTTCTTCTAGAAGTTGTTGGTCATGTATTTTTGTCGTAACAGCAGAAAA
ATAACTAGCACACACATCACACACACACACACACACACACACACAGAGAG
AGAGAGAGAGAGAGAGAGACACACAGAGAGAGAGAGATAGAGAGAGAGAG
ATTGAGACTTCTTTCTTTTCTTTCTTCTTTTTCCTTTTTTCCTTTACCAC
TTTTCACTCTTTTCTCTTTTTCCTCTCTTTTACCTCCCTTCTATTTTAAT
TACTTCTCTTTTTCCCCCCCTCTTTTTTTTTTTTCTCTTTTTTTACATCT
TCTTTTAATTTTTTTTCTCCTTTATTCTTCTCTCTTTTTTTCTCCACTTC
TTTACCCCTCTATTTCTTTTTCTTTCTTTTTTTTTTTTCTTTTTCCATTT
TTTTTCTCCCTTATTTTCTCTCCTCCTATATTTTTTATACTCCTCTCCCT
TCCTTTTATCTCCCCTCCTCATCTTTCTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_j09.b1 MSMg01no437_j09.b1 CHROMAT_FILE:
MSMg01no437_j09.b1 PHD_FILE: MSMg01no437_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:01 2005
         (483 letters)



>mm_chr3_124681213_124682095
          Length = 883

 Score =  685 bits (354), Expect = 0.0
 Identities = 425/460 (92%), Gaps = 19/460 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctgcacacccatttttttacactgtgcagcatttagaaactgtatttcaggtattttc 60
           |||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||| 
Sbjct: 460 acctacacacccatttttttacaccgtgctgcatttagaaactgtatttcaggtattttt 401

                                                                       
Query: 61  gaattagtggatagagtgacaccaccagtgggtgacgttaattgggacagtggccaaatg 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gaattagtggatagagcgacaccaccagtgggtgacgttaattgggacagtggccaaatg 341

                                                                       
Query: 121 ctctaaatcagatgataaggcttaagcttgttcccattgcattatcatctttacctttgt 180
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 340 ctctaaatcagatggtaaggcttaagcttgttcccattgcattatcatctttacatttgt 281

                                                                       
Query: 181 tacttgagttcacatgaccatgtatccaaaacaggtttagcagttagtttgtgcttcaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tacttgagttcacatgaccatgtatccaaaacaggtttagcagttagtttgtgcttcaga 221

                                                                       
Query: 241 agtagaggaggtctagaggtctttattttattttattttattttat-------------- 286
           ||||||||||| |||||||| |||||||||||||||||||||||||              
Sbjct: 220 agtagaggaggcctagaggtttttattttattttattttattttattttattttatttta 161

                                                                       
Query: 287 ttttcttatgatatttcatttcatttta-----ttattttattttattttagaggttatg 341
           |||| ||||| |||||||||||||||||     |||||||||||||||||||||||||||
Sbjct: 160 tttttttatgttatttcatttcattttattattttattttattttattttagaggttatg 101

                                                                       
Query: 342 aagatatacgccgcaagtctgcaataattctaatgtggcttcttgggaattttctcgata 401
           |||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 aagatataggttgcaagtctgcaataattctaatgtggcttcttgggaattttctcgata 41

                                                   
Query: 402 tgggccatttaagagtccatatctaggtacatctgactgg 441
           ||| | ||||||||||||||||||||||||||||||||||
Sbjct: 40  tggactatttaagagtccatatctaggtacatctgactgg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)