Query= MSMg01no437_j24.b1 MSMg01no437_j24.b1 CHROMAT_FILE:
MSMg01no437_j24.b1 PHD_FILE: MSMg01no437_j24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:04 2005
(502 letters)
>mm_chr3_141144227_141145128
Length = 902
Score = 949 bits (491), Expect = 0.0
Identities = 497/499 (99%)
Strand = Plus / Plus
Query: 4 ggaattctcttttctgtctcttctttatctggtcatcatggggcaagtagctacacccca 63
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcttttctctttcttctttatctggtcatcatggggcaagtagctacacccca 263
Query: 64 cccctgcattcccaacaaccatacatcaaagaccccaaaatagcaacatggtcaactgac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cccctgcattcccaacaaccatacatcaaagaccccaaaatagcaacatggtcaactgac 323
Query: 124 catcgactgaaaccttcaaaagaagaagggaaaataatttttcttcttttaggtcaatta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 catcgactgaaaccttcaaaagaagaagggaaaataatttttcttcttttaggtcaatta 383
Query: 184 tcttagatattctaccacagttgcagaaaggttagttttcttcaccttaaaaacccattc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcttagatattctaccacagttgcagaaaggttagttttcttcaccttaaaaacccattc 443
Query: 244 ccaatgaaggacccaaggagttgaaggggtttacagctgtataggaggaacaacaatatg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccaatgaaggacccaaggagttgaaggggtttacagctgtataggaggaacaacaatatg 503
Query: 304 aacttagagatcgatgtgggatctttaacttgtgttctttgtaatcaggcagtctgaagc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aacttagagatcgatgtgggatctttaacttgtgttctttgtaatcaggcagtctgaagc 563
Query: 364 ttgccttggcacagagcggaggaagtggtaagtaaaggggataacatttgaaatgtagat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttgccttggcacagagcggaggaagtggtaagtaaaggggataacatttgaaatgtagat 623
Query: 424 agagaaaaatatctaataaaataaaataaagtaaaataaaattatataaaatactattcc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agagaaaaatatctaataaaataaaataaagtaaaataaaattatataaaatactattcc 683
Query: 484 cattggattttctatactg 502
|||||||||||||||||||
Sbjct: 684 cattggattttctatactg 702
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space: 438864
Effective search space used: 438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no437_j24.g1 MSMg01no437_j24.g1 CHROMAT_FILE:
MSMg01no437_j24.g1 PHD_FILE: MSMg01no437_j24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:05 2005
(428 letters)
>mm_chr3_141281442_141282267
Length = 826
Score = 804 bits (416), Expect = 0.0
Identities = 425/428 (99%), Gaps = 2/428 (0%)
Strand = Plus / Minus
Query: 1 tccatattgactagctgtagcattcttaaccactcctgatttcctaacaaattccatttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tccatattgactagctgtagcattcttaaccactcctgatttcctaacaaattccatttg 567
Query: 61 tcaaagaaaaaccttgcattttaattatttgttttgacacagtgatgaagacatacctcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tcaaagaaaaaccttgcattttaattatttgttttgacacagtgatgaagacatacctcc 507
Query: 121 tgtttcttgtttctgcttcgaattacatatttccaggagacaatggggcattgatttttt 180
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 506 tgtttcttgtttctgcttcgaattgcatatttccaggagacaatggggcattga-ttttt 448
Query: 181 aaccacaagtaaacaaggcatctggactttgtcttaatgagataaagtttagtctgtgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aaccacaagtaaacaaggcatctggactttgtcttaatgagataaagtttagtctgtgct 388
Query: 241 ttctcagtgggatggtttttgctatttaattggtagcaaaaaaaccttcagtaatatgtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttctcagtgggatggtttttgctatttaattggtagcaaaaaaaccttcagtaatatgtc 328
Query: 301 ctttgtctgccagcagtgagttctgtgtgggaacaaagttcctgtaggaagccttcagat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctttgtctgccagcagtgagttctgtgtgggaacaaagttcctgtaggaagccttcagat 268
Query: 361 agaaatgctgtcttagaactaattagataaaaatcacagggaaaaaaatgttattcatga 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 267 agaaatgctgtcttagaactaattagataaaaatcacaggg-aaaaaatgttattcatga 209
Query: 421 cttgagag 428
||||||||
Sbjct: 208 cttgagag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 826
Length adjustment: 9
Effective length of query: 419
Effective length of database: 817
Effective search space: 342323
Effective search space used: 342323
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
