BAC Information

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BAC

Clone NameMSMg01-437K10
Chromosome3 (Build37)
Map Location 99,761,506 - 99,899,526
singlet/doubletdoublet
Overlap geneSpag17, LOC623045
Upstream geneLOC668557, Wars2, Tbx15, M6pr-ps
Downstream geneWdr3, Gdap2, LOC195514, 4930431B09Rik, OTTMUSG00000007026, Man1a2, Vtcn1, Trim45, Ttf2, Igsf2, Ptgfrn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437K10.T7 (MSMg01no437_k10.b1)MSMg01-437K10.TJ (MSMg01no437_k10.g1)
ACCAG528433AG528434
length753785
length of high quality
(start - end)		507 (72 - 578)246 (77 - 322)
definitionCHROMAT_FILE: MSMg01no437_k10.b1 PHD_FILE: MSMg01no437_k10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:06 2005CHROMAT_FILE: MSMg01no437_k10.g1 PHD_FILE: MSMg01no437_k10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,899,021 - 99,899,526)(99,761,506 - 99,761,750)
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGC
GGAATTCTTTAGAGTTTCTCGTCTGGTGAACATTTTGGAGCCGAAGCCAT
AGATTGCTTGAATAAAACTGTTAGGTGGGCTGCAACTTTAAACGTAACAC
ATTAATGTTAGTATTGACTTCTTTCATTTTTATTTTTAATTTTATTTTAT
TTTTAGTATTGACTTCTTTATAACATCTCTTCCTTACATAATTGCTCACC
TGTAAGCTCTTCAAGAGCCCACATTTAAGTTACCAGTTGATTTGGAGGAT
TTTTGCACCCACGCTGTAGCATGCAGTAATCAGACACCATACTTTCTGTG
GGATGTGTATTAGTGAACGCCATCTTTATGACCCAAATTATGACCCACAG
GGCATTACAATGTGTTTGCCCTATGGCGCTAAGGAAGCTGTGTGTCAGGG
AAATGATTTCCCTCATATTAAAACAGGTTAGCCAGCATACTGAAGTTGTT
TCTCTAAACACATACCTGCTACCAAGTTCTAAAGATCTATATATCATGTA
TTTTACAATTTTGGGTGATGTTGCTTACAGTTTGTCTAAAGAACGCGCTA
TCTTTGAGATGTCCCTTCTGTCAGATAAAGAGTATGATCCCTGTTCATGA
TAGACATATCTAAAAACACTGATCTACATCAGGTTAACTTAGTTTTCTTT
CTGCCACGACTTTCTGTAGTTTTTAATTTATGCGTGCAATTCCCTCCTAA
AAN

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGATGGGGAATGTTGGCTTTAAG
TAATTTCAAAGCAAACTTCAAGTGCTATGAGAGATACAAAAAGGTTATCC
AGCCCAATGTAGCCTCACAGCATACTTCAAGATGAGCAGACACACAGAAC
TACTAAAGTTTCAGCTGCAGGAGTAGACACAAGAGAAATACAACTGAGAC
CTCCATCAATAGGACTAGGGACAGCAATCTCAGGATTGGGAGTGTGGGGA
GGGTGGCATGCTCTTTGCTTTTATTTTTTTTATTTCTATCATCTCACCTC
CTGCTGCCAGCAGTTCTGATGTGCCATTCTTTGACATCGTCTGGAGGACC
TGTTAATGGTGCTGAATCCCCCCCAGCATCTAGTGTCGGCCATTACCTGA
TATCTCCCCGCGTTCTGACTTCTCTTCCCCTCTAACCAAATATACCCCAT
CCCTCAATGTCTCTCCCCTCTTGGCTTATCTGCCTCTTTCCCCCCGGCTA
TTCCTTGCCTCTCTCCGATCTTTTTCCCTGTGTTTCTTCTATTTATTCCC
TTCCTTTTCCTTCTCGATCTTCATTACTTTATCTATCCCTACCTTCTTTT
TTTCCCTTTCCCTTCGTTCTTCTCTTTTATCTCTTTCGCCTTTTTTGCCA
CTCCTCCATTCGTTACCATTTCCGCTCTTACTTTTCCCTGTCTCCCTATT
TCATTTTCCTTTCTTTTCCTCCCACCTCCTACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_k10.b1 MSMg01no437_k10.b1 CHROMAT_FILE:
MSMg01no437_k10.b1 PHD_FILE: MSMg01no437_k10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:06 2005
         (507 letters)



>mm_chr3_99898687_99899593
          Length = 907

 Score =  971 bits (502), Expect = 0.0
 Identities = 505/506 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctggtgaacattttggagccgaagccatagattgcttgaataaaactgttaggtgggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 tctggtgaacattttggagccgaagccatagattgcttgaataaaactgttaggtgggct 781

                                                                       
Query: 61  gcaactttaaacgtaacacattaatgttagtattgacttctttcatttttatttttaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 gcaactttaaacgtaacacattaatgttagtattgacttctttcatttttatttttaatt 721

                                                                       
Query: 121 ttattttatttttagtattgacttctttataacatctcttccttacataattgctcacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 ttattttatttttagtattgacttctttataacatctcttccttacataattgctcacct 661

                                                                       
Query: 181 gtaagctcttcaagagcccacatttaagttaccagttgatttggaggatttttgcaccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gtaagctcttcaagagcccacatttaagttaccagttgatttggaggatttttgcaccca 601

                                                                       
Query: 241 cgctgtagcatgcagtaatcagacaccatactttctgtgggatgtgtattagtgaacgcc 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 cgctgtagcgtgcagtaatcagacaccatactttctgtgggatgtgtattagtgaacgcc 541

                                                                       
Query: 301 atctttatgacccaaattatgacccacagggcattacaatgtgtttgccctatggcgcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 atctttatgacccaaattatgacccacagggcattacaatgtgtttgccctatggcgcta 481

                                                                       
Query: 361 aggaagctgtgtgtcagggaaatgatttccctcatattaaaacaggttagccagcatact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 aggaagctgtgtgtcagggaaatgatttccctcatattaaaacaggttagccagcatact 421

                                                                       
Query: 421 gaagttgtttctctaaacacatacctgctaccaagttctaaagatctatatatcatgtat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gaagttgtttctctaaacacatacctgctaccaagttctaaagatctatatatcatgtat 361

                                     
Query: 481 tttacaattttgggtgatgttgctta 506
           ||||||||||||||||||||||||||
Sbjct: 360 tttacaattttgggtgatgttgctta 335


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no437_k10.g1 MSMg01no437_k10.g1 CHROMAT_FILE:
MSMg01no437_k10.g1 PHD_FILE: MSMg01no437_k10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:06 2005
         (246 letters)



>mm_chr3_99761306_99761951
          Length = 646

 Score =  443 bits (229), Expect = e-129
 Identities = 241/245 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggatggggaatgttggctttaagtaatttcaaagcaaacttcaagtgctatgagagata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggatggggaatgttggctttaagtaatttcaaagcaaacttcaagtgctatgagagata 260

                                                                       
Query: 61  caaaaaggttatccagcccaatgtagcctcacagcatacttcaagatgagcagacacaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaaaggttatccagcccaatgtagcctcacagcatacttcaagatgagcagacacaca 320

                                                                       
Query: 121 gaactactaaagtttcagctgcaggagtagacacaagagaaatacaactgagacctccat 180
           ||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 321 gaactactaaaatttcagctgcaggagtggacacaaaagaaatacaactgagacctccat 380

                                                                       
Query: 181 caataggactagggacagcaatctcaggattgggagtgtggggagggtggcatgctcttt 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 caataggactagggacagcaatctcaggattgggagtgtgggaagggtggcatgctcttt 440

                
Query: 241 gcttt 245
           |||||
Sbjct: 441 gcttt 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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