NNTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATAGTCTCTATGCCTCAAGATCTCCATACCAAGATCCAGAT
CAGAAACTTCTATCTCCAAGCCTCCAGATTAGGGTCACTGGTGAGCCTTC
CAATTCTGGATTGTAGTTCATTCCAAATATAGTCAAGTTGACAACCAGGA
ATAGCCACTACAGCAACCTACTGTGGGAATTGGTTCTAAAGCTTTGTCTT
ATGTCAGCTGCCAAGAGCCATGCTTCCAGCCCTGAGGTTTGCTGCACCCA
GTTGACTTTGATTGATAATAAAGAATTGCCGTATAACCAATGGCTGGGCA
GGGAGACAGGACAGGAATTTTAGATTGTGTGAGAAAGGAACTAAGAAAGA
GGGAAAGAAGAGGAGAATCATCATGTCAGGGAAGCAGAAAGATGATTTTG
TCTGTGGTAGCAGAGGTAACATGAAGATTTTAAAAGATGTTAACCGAGAA
TACTGTAAGGAGGGTTTGCAAGGGTAGGTTTGGAAGTGCCCTAATCAAGT
TGACCTAATCAAGGCATATCAAAATTAGCTGGCCTGTGTGTCTTTCACTT
GAGAACCCAGAAAACTCTTAGGGGAGTGCAGTTTGGGATCCGGAAGGAAC
CAAGCAGTTGGATTATTCCCCGTCTGTAACCTACGGTTTGGAAAAAACCT
TTTGAATTCCCCCCTTTAATAGAGGGGTTATACTCTCAATAATTTCA

NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAAATGAAAGAGGAAGTCA
TGGGCTGAAAATACAGCTCAGTAGCACCACACATACCAAACACATATGAA
ACACTAGGATATGTTCCTACTCCTCCTAAAGAGAAGATTTAGAGTTAGGA
GCCTCAGATGAAAGAAAACATGTGACATTTGTTTTTCAAAAAACAGGAAG
GGGAAGAAGAGAAGAAAGGATGACGCTCATTTAGTAAGATGAAATTAATT
AAGAGGGAATGATTTAGTAAAACTCAGGTATCCTCTCTCTCTTTTCCTCC
CCCCCCCACACCCACACCACTCCTTCTACATAAAACAAACAAAAATTTTA
AAAGGAAAAATAAAATTAAAACCGAATGTAAAACATACCATAGCAATGTC
TTTTGGGGAGTAAATATAGAAAAACATAATAAAGGGGAAAAGGTACTATG
TTAAGCAACATAGTAAATTAGGAAACTGGAAAAAAGAAAATGACTTGTGT
GGCTGAAAACACAGATTTTATTGAAAATAATGGCTTTGCAATTTCCCTGT
TTGTTTATTTCTTTTCCCTCCAAATACCCCATTTTTTCTGGATGGGGTGG
CCTGAAATGACGGCTCCCATGTGGGTGGCCCGGGTTGGGCCCCCTGGGAT
TCCACTCCCCCGAAGAGGATGGATTGCTACCTTTTACCCTTTT

Query= MSMg01no437_l16.g1 MSMg01no437_l16.g1 CHROMAT_FILE:
MSMg01no437_l16.g1 PHD_FILE: MSMg01no437_l16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:13 2005
         (506 letters)



>mm_chr3_49093723_49094628
          Length = 906

 Score =  971 bits (502), Expect = 0.0
 Identities = 505/506 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaatgaaagaggaagtcatgggctgaaaatacagctcagtagcaccacacataccaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataaatgaaagaggaagtcatgggctgaaaatacagctcagtagcaccacacataccaaa 260

                                                                       
Query: 61  cacatatgaaacactaggatatgttcctactcctcctaaagagaagatttagagttagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacatatgaaacactaggatatgttcctactcctcctaaagagaagatttagagttagga 320

                                                                       
Query: 121 gcctcagatgaaagaaaacatgtgacatttgtttttcaaaaaacaggaaggggaagaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcctcagatgaaagaaaacatgtgacatttgtttttcaaaaaacaggaaggggaagaaga 380

                                                                       
Query: 181 gaagaaaggatgacgctcatttagtaagatgaaattaattaagagggaatgatttagtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagaaaggatgacgctcatttagtaagatgaaattaattaagagggaatgatttagtaa 440

                                                                       
Query: 241 aactcaggtatcctctctctcttttcctcccccccccacacccacaccactccttctaca 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aactcagggatcctctctctcttttcctcccccccccacacccacaccactccttctaca 500

                                                                       
Query: 301 taaaacaaacaaaaattttaaaaggaaaaataaaattaaaaccgaatgtaaaacatacca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaaacaaacaaaaattttaaaaggaaaaataaaattaaaaccgaatgtaaaacatacca 560

                                                                       
Query: 361 tagcaatgtcttttggggagtaaatatagaaaaacataataaaggggaaaaggtactatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagcaatgtcttttggggagtaaatatagaaaaacataataaaggggaaaaggtactatg 620

                                                                       
Query: 421 ttaagcaacatagtaaattaggaaactggaaaaaagaaaatgacttgtgtggctgaaaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttaagcaacatagtaaattaggaaactggaaaaaagaaaatgacttgtgtggctgaaaac 680

                                     
Query: 481 acagattttattgaaaataatggctt 506
           ||||||||||||||||||||||||||
Sbjct: 681 acagattttattgaaaataatggctt 706


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)