BAC Information

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BAC

Clone NameMSMg01-437O18
Chromosome3 (Build37)
Map Location 96,827,812 - 96,828,305
singlet/doubletsinglet
Overlap genenone
Upstream geneVps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik
Downstream geneGja5, Acp6, Bcl9, Olfr1402, Chd1l, Fmo5, Prkab2, Pde4dip, Sec22b, EG433632, LOC100042975, Notch2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437O18.T7 (MSMg01no437_o18.b1)MSMg01-437O18.TJ (MSMg01no437_o18.g1)
ACCAG528639AG528640
length800801
length of high quality
(start - end)		430 (74 - 503)494 (71 - 564)
definitionCHROMAT_FILE: MSMg01no437_o18.b1 PHD_FILE: MSMg01no437_o18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:29 2005CHROMAT_FILE: MSMg01no437_o18.g1 PHD_FILE: MSMg01no437_o18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTCTGGAGTTTTCTCAGAAAATTGGACATAATAATACCGGAAGATC
CAGCAATACCTCTCCTGGGCATATACCTAGAAGAAGTTGCAACTGGTAAT
AAGAACACATGCTCCACTATGTTCATAGCAACCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGTCCCTCAACAGAAGAATGGATACAGAAAA
TGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAACAATGGA
TTATGAAATTATTGGGCAAATGGATGTATCTGGAGGATATCATCCTTAGT
GAGGTAACCCAATCACAAAAGAAGTCATTAGATATGTACTCACTGATAAG
TGGATATTAGCCCAGAAACATAGAACACCCAAGATACAATTTGCAAAACA
CAAGAAAATCAAGAAGAGGGAAGACCAATGGGTGGATACTTCGTTCCTCC
TTAGAATAGGGAACAAAATACCCATGANATGTGTTACAGAGACAAAGTTT
GGAGCTAAGAGGAAAGGATGGACTATCTAGAGAATACCCCACCCGGGGGA
TACATCCCATAATCCGGCATTAAACCCAGACACCATTTTGCTATGCCCGA
AAGAATTTGCTGAAGGGACCTTGGTTAACCTGTTTCCAAAGAGGCAATGC
CCGGGCCCGGGCAATAAAAAAAGGATGGTTCCCCCCCCTTTATAAAAGGA
ACCCAGAAGGCGTTGGTAATGTTCTCCCGTCAAAAACACAAACCGTTTCT


GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTATCTAAATCACTCGTGTTCCTAATCCAGA
AAAGGTCAAAGCTCACTGCTTCAAGTCTAACTAATCAAGGTTATCTCTCA
CAAACCTTCAGTTAGTGAAGCGGCTGCACAACCTACATGATAAATCTAGC
AGAGGCAGGAATGTTCCGCCTCTTCCTTGACCTAGAGGTCTCTTAGCAAA
CAGACTGAAGTCTGCCCCCTAACATGAGGTGAGTCTTTCAGTTCATGTGA
CAGACATGGAGAAACCATCTCAGCCCACGTGTTGATCCCTGGGATGTAAC
TTTCCCAGACTCATACAACTCAACAAGACTAGCGCTCAGCTCTCATCAGA
CCTAGATGTCTAGGCGATTCTGAGGCTGCAGGATTACAGGCCTGGGACCT
GACCTCTACAAATCTGTGATATGTTGGGTCATGAGTAAATTTCTGCCATG
CTCTGCACAGCTCCATGGACTGACCTCATTGGAGTGGCAGAAGAATAAAG
AAAGGACAGACAGACATATGGACACAGAACAGCTGAGGTCAAGGCGTCCA
GGCTCTCTCATGGGGAGCCTTGGAAGCACCCTGAAGCTTTATGGTGTTAT
CATATACAGGTGAAAAGGGATCAGGAATACTGGCTACCGTTGAACAAAGG
GCTTGGAGCCATATTTTTGGACTTGGATAAAAGAACCCGGTTTACTTAAA
TTCTTTAGGTGCCCCCTCTTCCTTTTAAGAATTTCCCTAGGGNNANNNTT
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_o18.g1 MSMg01no437_o18.g1 CHROMAT_FILE:
MSMg01no437_o18.g1 PHD_FILE: MSMg01no437_o18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:29 2005
         (494 letters)



>mm_chr3_96827612_96828505
          Length = 894

 Score =  924 bits (478), Expect = 0.0
 Identities = 490/494 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatctaaatcactcgtgttcctaatccagaaaaggtcaaagctcactgcttcaagtctaa 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 694 tatctaaatcactcgtgttcctaatccagaaaaggtcagagctcactgcttcaagtctaa 635

                                                                       
Query: 61  ctaatcaaggttatctctcacaaaccttcagttagtgaagcggctgcacaacctacatga 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 634 ctaatcaaggttatctctcacaaacctccagttagtgaagcggctgcacaacctacatga 575

                                                                       
Query: 121 taaatctagcagaggcaggaatgttccgcctcttccttgacctagaggtctcttagcaaa 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 574 taaatctagcagaggcaggaatgctccgcctcttccttgacctagaggtctcttagcaaa 515

                                                                       
Query: 181 cagactgaagtctgccccctaacatgaggtgagtctttcagttcatgtgacagacatgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 cagactgaagtctgccccctaacatgaggtgagtctttcagttcatgtgacagacatgga 455

                                                                       
Query: 241 gaaaccatctcagcccacgtgttgatccctgggatgtaactttcccagactcatacaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gaaaccatctcagcccacgtgttgatccctgggatgtaactttcccagactcatacaact 395

                                                                       
Query: 301 caacaagactagcgctcagctctcatcagacctagatgtctaggcgattctgaggctgca 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 caacaagactagcgcccagctctcatcagacctagatgtctaggcgattctgaggctgca 335

                                                                       
Query: 361 ggattacaggcctgggacctgacctctacaaatctgtgatatgttgggtcatgagtaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ggattacaggcctgggacctgacctctacaaatctgtgatatgttgggtcatgagtaaat 275

                                                                       
Query: 421 ttctgccatgctctgcacagctccatggactgacctcattggagtggcagaagaataaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ttctgccatgctctgcacagctccatggactgacctcattggagtggcagaagaataaag 215

                         
Query: 481 aaaggacagacaga 494
           ||||||||||||||
Sbjct: 214 aaaggacagacaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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