Query= MSMg01no437_p07.b1 MSMg01no437_p07.b1 CHROMAT_FILE:
MSMg01no437_p07.b1 PHD_FILE: MSMg01no437_p07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:31 2005
(444 letters)
>mm_chr3_149610806_149611653
Length = 848
Score = 806 bits (417), Expect = 0.0
Identities = 435/443 (98%), Gaps = 4/443 (0%)
Strand = Plus / Plus
Query: 6 gaattcagcaaaagctcattaagattttggtctcttgaataaagaattaataacaagttg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcagcaaaagctcattaagattttggtctcttgaataaagaattaataacaagttg 265
Query: 66 aaattagataggctccaatgatctatattttaaagttagggcatgtgtcaggggtgcaac 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aaattagataggctccaatgatctatattttaaagttagggcatgtgtcaggggtgcaac 325
Query: 126 tagactctactaaatccacagagtcccttatcttatctatttacatcttctgcttctgtg 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tagactctactaaatccacagagtcccttatcttatctatttacatcttctgcttctgtg 385
Query: 186 gaaaagaacagggcatacctgtcatcaggatttgctcaaaaatatattctcctgaaatgg 245
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 386 gaaaagaacagggcatacctgtcatcagaatttgctcaaaaatatattctcctgaaatga 445
Query: 246 gggggggaa----tctagcttcaatgagaaacaaacagaggcgaacagatagagggctga 301
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ggggggaaaaaaatctagcttcaatgagaaacaaacagaggcgaacagatagagggctga 505
Query: 302 tacctctacatttagaggaggcttcctcagtgatcaggttcttgtattgtcagccttgcc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tacctctacatttagaggaggcttcctcagtgatcaggttcttgtattgtcagccttgcc 565
Query: 362 tgctttcttgtaaaagaaattagcctttttttggcacattgtattgtcaattccaaaaga 421
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 566 tgctttcttgtaaaagaaattagcctttttttggcacattatattgtcaattccaaaaga 625
Query: 422 aatctgacatctacaaatgcttc 444
|||||||||||||||||||||||
Sbjct: 626 aatctgacatctacaaatgcttc 648
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 848
Length adjustment: 10
Effective length of query: 434
Effective length of database: 838
Effective search space: 363692
Effective search space used: 363692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no437_p07.g1 MSMg01no437_p07.g1 CHROMAT_FILE:
MSMg01no437_p07.g1 PHD_FILE: MSMg01no437_p07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:32 2005
(508 letters)
>mm_chr3_149777901_149778806
Length = 906
Score = 955 bits (494), Expect = 0.0
Identities = 504/508 (99%), Gaps = 2/508 (0%)
Strand = Plus / Minus
Query: 1 cacaggatcatctaaaatggaatttcccttcagatgaattacggcatgagatcaactaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 cacaggatcatctaaaatggaatttcccttcagatgaattacggcatgagatcaactaaa 647
Query: 61 ctcataccttgtgtttataattctaatgtgctacaagctctttaaagataagattaatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ctcataccttgtgtttataattctaatgtgctacaagctctttaaagataagattaatgt 587
Query: 121 gatcaaagtcaatgaagtccatatagtcctaccactcagactctaaggcatgaggctaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gatcaaagtcaatgaagtccatatagtcctaccactcagactctaaggcatgaggctaat 527
Query: 181 tgagcaaggtgagcagctgtaagcatgcattaagataaataaaacaaaagaaaataaaag 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 526 tgagcaaggtgagcagctgtaagcatgcattaagataaataaaacagaagaaaataaaag 467
Query: 241 actatgttcagagaaggagacagggaggcagtttataaaacaaaagaaaatgaaagacca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 actatgttcagagaaggagacagggaggcagtttataaaacaaaagaaaatgaaagacca 407
Query: 301 tgtttagagaaggagacagggagagagaaactgcctccccaaggaaatgacagatggcta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tgtttagagaaggagacagggagagagaaactgcctccccaaggaaatgacagatggcta 347
Query: 361 gaccttaaaattcagtaagatatgcaatctcataaaactctgtaaaatagatgttgtagc 420
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 346 gaccttaaaattcagtaagatatgcaatctcataaaa--ctgtaaaatagatgttgtagc 289
Query: 421 agaagaaagacaattaatatataggacgcatctttcatgggagactttttgatggctttg 480
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 288 agaagaaagacaattaatatatagggcgcatctttcatgggagactttttgatggctttg 229
Query: 481 caatctctccatctttcaagcacattta 508
||||||||||||||||||||||||||||
Sbjct: 228 caatctctccatctttcaagcacattta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 906
Length adjustment: 10
Effective length of query: 498
Effective length of database: 896
Effective search space: 446208
Effective search space used: 446208
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
