BAC Information

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BAC

Clone NameMSMg01-438A08
Chromosome3 (Build37)
Map Location 131,478,641 - 131,663,109
singlet/doubletdoublet
Overlap geneOlfr375-ps1
Upstream geneLOC546811, LOC545568, Lef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1
Downstream geneDkk2, LOC100039018, EG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt, Gstcd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438A08.T7 (MSMg01no438_a08.b1)MSMg01-438A08.TJ (MSMg01no438_a08.g1)
ACCAG528713AG528714
length761795
length of high quality
(start - end)		635 (62 - 696)166 (70 - 235)
definitionCHROMAT_FILE: MSMg01no438_a08.b1 PHD_FILE: MSMg01no438_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:37 2005CHROMAT_FILE: MSMg01no438_a08.g1 PHD_FILE: MSMg01no438_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,662,475 - 131,663,109)(131,478,641 - 131,478,806)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCGGGG
CAAGGGTTTCGTTGAGCTCTATTTTCAGCCAATTAGAATAGAATAAACAA
GAGTTTCTTGAATTTGGGAAACAACAACCCCTAGTCAAATCATCAGCACT
AGAGAGAAATTTGTAACAAAGCAGAAGAAAGAGGCATATACAATAAAGGG
GAGGGAAACTCCAACAAATGCAGGAAATAGGACAGAGAATGAACTTGGAG
AGGATGTTGACTTTTGTCATTAACTTATAAATAAAGTATTTTTAAATAGT
GAATTTCTCATTTTAAAAATCTTAAAAGTTCACCCAGCATATTTTATCAA
TGACTTACTGCAGTTTCCCCACTACATTATGAACTTTAAAACATTAAACA
AAACTTTCATTATATTAATAAAGGATAAAAAGTATTCCTAATCAATTGCA
GCAAAACAGAAATGTTGCATATTTCAAACAAAAGCATTAACAATGAAGTA
TAAAATACTCACTATTCCACCAAAATACTACTTTGCCGGAAAAATCAATT
TATACATTTTTATTCTTTATCATCTCTACATTTTATTATCAATACATTTA
AAACTTATTATTTTGTTTCTGAGTCACTGGACATGTGTGGGTACCCCAGG
GGAAACAATAATTTAATATTGTACAAGGATGCCAGTGGTCCCGCCGTGTA
GAGACTCAGCATGGAAGAGTGGCATAAAGAGATTCTCTTCCTCCCTCCTG
CAGAGAGTAGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGAGGCAAATACATGTTCCATAGGTGGATCT
TACATACTACACTGAGAAGAGTGGAGGATGTATGGTGGGTATACATCATC
AGAGAAAGGTCAGAGTCATTTGGTGAGCTTCTATTCAGAGCTCAATGAAG
GCACAGAAGATGGCTTATGTGTCTATCACAGTATGTATGCTATACATATA
CTATATGTATAATGACCAGTTAAATGCACAATAGTTAAGGCAATCAGCGA
GAGAACTTTTACCTAGTCCTTATTATTTTCTTTGTGTAGTAGCTACGTAA
AAGGACTCATATGTCAATCGAGATGATTACATTGAGAATAGACGACCATT
CTGGGGTATTTCCGCAGNTTTCCTATTTTTTTAAGCTAGACCCACTAATT
ACTTTATGCCCAAGTGCAATATCATTAATCGGCCTGTTTCTAATTAGGCT
AGGTCATTGTCTACTCCCCCGTCTTGAGTTCATCTTCATTTTGTGTATTT
CAGTATCCCCTATTTGACTCTCTTTCTCCGCATGTCTCTACTCGCTTTGC
CTCTCCTGTATTATCCATCTTCTCTCTTTCCTCTCCTTCTTTTCACCGTC
CATTTTTCTTTTCCTGCTTTTCCTTTTATTTCTTTCCCCGTTTCCTTTTT
CCTTTCTTTCCTACTCTATCCTTTTTACCCTTTGCTCCCCTCCCTATCTT
TCTTTTTCTTTCTTCGCTTCTTTCTTTTCCTGTCCTTTTCTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_a08.b1 MSMg01no438_a08.b1 CHROMAT_FILE:
MSMg01no438_a08.b1 PHD_FILE: MSMg01no438_a08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:37 2005
         (635 letters)



>mm_chr3_131662275_131663309
          Length = 1035

 Score = 1212 bits (627), Expect = 0.0
 Identities = 633/635 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgagctctattttcagccaattagaatagaataaacaagagtttcttgaatttgggaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 ttgagctctattttcagccaattagaatagaataaacaagagtttcttgaatttgggaaa 776

                                                                       
Query: 61  caacaacccctagtcaaatcatcagcactagagagaaatttgtaacaaagcagaagaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 caacaacccctagtcaaatcatcagcactagagagaaatttgtaacaaagcagaagaaag 716

                                                                       
Query: 121 aggcatatacaataaaggggagggaaactccaacaaatgcaggaaataggacagagaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 aggcatatacaataaaggggagggaaactccaacaaatgcaggaaataggacagagaatg 656

                                                                       
Query: 181 aacttggagaggatgttgacttttgtcattaacttataaataaagtatttttaaatagtg 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 655 aacttggagaggatgttgacttttgtcattaacttgtaaataaagtatttttaaatagtg 596

                                                                       
Query: 241 aatttctcattttaaaaatcttaaaagttcacccagcatattttatcaatgacttactgc 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 aatttctcgttttaaaaatcttaaaagttcacccagcatattttatcaatgacttactgc 536

                                                                       
Query: 301 agtttccccactacattatgaactttaaaacattaaacaaaactttcattatattaataa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 agtttccccactacattatgaactttaaaacattaaacaaaactttcattatattaataa 476

                                                                       
Query: 361 aggataaaaagtattcctaatcaattgcagcaaaacagaaatgttgcatatttcaaacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aggataaaaagtattcctaatcaattgcagcaaaacagaaatgttgcatatttcaaacaa 416

                                                                       
Query: 421 aagcattaacaatgaagtataaaatactcactattccaccaaaatactactttgccggaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 aagcattaacaatgaagtataaaatactcactattccaccaaaatactactttgccggaa 356

                                                                       
Query: 481 aaatcaatttatacatttttattctttatcatctctacattttattatcaatacatttaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 aaatcaatttatacatttttattctttatcatctctacattttattatcaatacatttaa 296

                                                                       
Query: 541 aacttattattttgtttctgagtcactggacatgtgtgggtaccccaggggaaacaataa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aacttattattttgtttctgagtcactggacatgtgtgggtaccccaggggaaacaataa 236

                                              
Query: 601 tttaatattgtacaaggatgccagtggtcccgccg 635
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 tttaatattgtacaaggatgccagtggtcccgccg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no438_a08.g1 MSMg01no438_a08.g1 CHROMAT_FILE:
MSMg01no438_a08.g1 PHD_FILE: MSMg01no438_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:37 2005
         (166 letters)



>mm_chr3_131478441_131479006
          Length = 566

 Score =  306 bits (158), Expect = 6e-88
 Identities = 164/166 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaggcaaatacatgttccataggtggatcttacatactacactgagaagagtggaggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 agaggcaaatacatgttccataggtggatcttacatactacactgagaagagtggaggag 260

                                                                       
Query: 61  gtatggtgggtatacatcatcagagaaaggtcagagtcatttggtgagcttctattcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtatggtgggtatacatcatcagagaaaggtcagagtcatttggtgagcttctattcaga 320

                                                         
Query: 121 gctcaatgaaggcacagaagatggcttatgtgtctatcacagtatg 166
           |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 gctcaatgaaggcacagaagatggtttatgtgtctatcacagtatg 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 566
Length adjustment: 8
Effective length of query: 158
Effective length of database: 558
Effective search space:    88164
Effective search space used:    88164
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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