BAC Information

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BAC

Clone NameMSMg01-438B09
Chromosome3 (Build37)
Map Location 10,717,298 - 10,717,819
singlet/doubletsinglet
Overlap genenone
Upstream genePag1, LOC621504, Fabp5, LOC100041480, Pmp2, Fabp9, Fabp4, 1700008G05Rik, Impa1, Slc10a5, Zfand1, Chmp4c, Snx16
Downstream geneLOC670564, LOC383826, EG667978, LOC667999
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438B09.T7 (MSMg01no438_b09.b1)MSMg01-438B09.TJ (MSMg01no438_b09.g1)
ACCAG528763AG528764
length7771,532
length of high quality
(start - end)		522 (65 - 586)---
definitionCHROMAT_FILE: MSMg01no438_b09.b1 PHD_FILE: MSMg01no438_b09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:43 2005CHROMAT_FILE: MSMg01no438_b09.g1 PHD_FILE: MSMg01no438_b09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTCC
AAGCCAGTATACTCAGGGCTACTAGTAAGACCCTGTCTCCAAAAGTAAAA
ATAAGTAAACATAAAAATAAAAAAAGAAAAACTGTATCCAAAAACAGTCA
CAACACAAACTTCTGTGAATGAAGGCAGCAACAGGGAAAGGCACAGCTAA
TATCATGATACTACCAGGCCCCTCCTCACAATTCCACTTCCACAGCCCTT
GTCAAATGTCTTTTCTGATAACTCCATGCCCACTACACACCTCTCCACTC
AACCTTGTACAGTGCCCTCTTTCTTGCCTCATCTCTACCATGATCTGAAA
ATAAGATAAAATACTGAGTCCTTAGAATATATTTCCCAAGGGTAAGCTCC
TGCCTGGAAAATAAATTGGCTGATAAACTATCCTATGAAAGCTTGTAAGG
TCTACCAGCCTAAACAAAACAAAACCTTTAGTACTAAGGATACAGGAACA
TGTGATAAATTCACTTTCATTAGCTGCTATTTTAGTCACAAAAAAAGGTT
TCCTGTGTATCAAGAGTACACTTTTCCCCTCAAATGTGTGTATTCTCTCA
TAATCAGNAAATATTGTCCCTTATCTACCAATGTGTGAAACTTAGACAAA
CTACCTTACTTGTTGTAGCAAAGAAAACAAGCCTTATATTTTGTTATTAT
TCTAACCCCAGATGGAGAATCTTTAAAACACTGCTAAAAAACCCTTGACC
TTTTGAAAGGAAAGGAAATAGAACAAN

AATAGGCTGATAACCCTGTGTTCTTCTNNGCAGATTCTATTCGCTCGCGT
CCGGTGGGGTGGTTTATGGGGAGGTAATCCTTCTTGCTGGTGCGCTCGTG
AGCGTGATCTGACAGTGGTGAAGAGCGAATATACAGCTCGCTGGTACGCG
CGACACTAGATGTACTGCTAGCTACCTGCCCGCCACGGTATGCATCCATC
ACATTAATANTATACGTAGCCGAGTAANACGGCCCGCNCCTGCGCTCGTT
CTGTGCGGCGTCGGCTGACTCTCAGAGCGCTGTCATCAGCNATACGAGTC
CAGTACGACGTGGACCACGCGCTGCGNCGCGGAGCTCGTGACAGGAACGA
GGATGAACGTAGATGAATAGAAACTATGTGATGTCGAGAGCAGGCCACCT
TCGCGGTACGAGCTACGATTGTAATTATAATTGTGTCTGGACTGACGNTT
GACTATGTAATATATGAATAGGAACTATATGAAAACGCTGGCGCGAGAAA
CACATATGTAATCACCTCGCANACACACATCTATATAATAACTCACTACG
CGCGCAGTATTCGATTTTCTATAATCGATGTACGGCTACGTAGAGCGTAC
TGTACACGCGCGGGGATGAGTATACTAAGTGTAATGTAATCGCGATCAAC
GAGCTGACTACTAGTCGTCGCCGAAGACCAGTTAGAGATAACGTAGTGGT
GCGCGACAATCGCGANGCGATAGCACCGCGATAGTTAGTAGGCACTCTAC
GCGTGGCGAGAAGTATGACTCACTATAATTCTTACTCCTACGCGCGACAC
GATTATAATCCCTCTCGTTACTTAGCTCACACACACATATTATCGGTCGC
TGCGTGCAACATTGATCATTCGCTGAGAGGTATCACGAGCTGCAATGAAC
ATATACGATGTAGTACGAGAACAGAGTCGTATTGGTGCACGCGTCGTNCG
TGTATACACTATATTTACACACGAACGATCGTATCACCCAATCCTACCGC
CTATATATCGTGACCAGTGCGATGTGATAGCGCTGACGTGGGTGTCGCCG
TTATCACGTTGCGAGTGTAGTGCGAGCCATAGCAGTAAGAGTATGATATC
GCACACGAGATAATGAGATATGGTGATGATTATAGTCGGACGTCGCGTCG
CGTAAGACGGAATGTCGCTCACNCTGCATTCTAGCTCGACTCTTCAAGTT
TAATCACTGAGAGAGTCGATGATAGAGTAGATCTCGACTGGACAACACGC
AACGTCAACACCGTGTACGTTTGTACTCCGCAGAAGATTGCATCTCGCAG
TATGTACACTATATACATACCACACCTCTGCCGCTTACTATTTATGTTAT
TGATGATCTTCATGTCTCGCTCTCTTCTTATATCACCTCGTCACGTGCTA
TCATATGCCGTAAATATATACATACTTATTNACACTTCTCATCGACTGTG
CATCTCGCGACTGACTCGTACACATCGCGAGTCNTGTCAGAGTAGTCGAT
CTCCGCAACACACATCGATATACGCCGCATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_b09.b1 MSMg01no438_b09.b1 CHROMAT_FILE:
MSMg01no438_b09.b1 PHD_FILE: MSMg01no438_b09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:43 2005
         (522 letters)



>mm_chr3_10717033_10717954
          Length = 922

 Score =  994 bits (514), Expect = 0.0
 Identities = 520/522 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggctactagtaagaccctgtctccaaaagtaaaaataagtaaacataaaaataaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 agggctactagtaagaccctgtctccaaaagtaaaaataagtaaacataaaaataaaaaa 728

                                                                       
Query: 61  agaaaaactgtatccaaaaacagtcacaacacaaacttctgtgaatgaaggcagcaacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 agaaaaactgtatccaaaaacagtcacaacacaaacttctgtgaatgaaggcagcaacag 668

                                                                       
Query: 121 ggaaaggcacagctaatatcatgatactaccaggcccctcctcacaattccacttccaca 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 667 ggaaaggcacagctaatatcatgatactacgaggcccctcctcacaattccacttccaca 608

                                                                       
Query: 181 gcccttgtcaaatgtcttttctgataactccatgcccactacacacctctccactcaacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gcccttgtcaaatgtcttttctgataactccatgcccactacacacctctccactcaacc 548

                                                                       
Query: 241 ttgtacagtgccctctttcttgcctcatctctaccatgatctgaaaataagataaaatac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ttgtacagtgccctctttcttgcctcatctctaccatgatctgaaaataagataaaatac 488

                                                                       
Query: 301 tgagtccttagaatatatttcccaagggtaagctcctgcctggaaaataaattggctgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tgagtccttagaatatatttcccaagggtaagctcctgcctggaaaataaattggctgat 428

                                                                       
Query: 361 aaactatcctatgaaagcttgtaaggtctaccagcctaaacaaaacaaaacctttagtac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aaactatcctatgaaagcttgtaaggtctaccagcctaaacaaaacaaaacctttagtac 368

                                                                       
Query: 421 taaggatacaggaacatgtgataaattcactttcattagctgctattttagtcacaaaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 taaggatacaggaacatgtgataaattcactttcattagctgctattttagtcacaaaaa 308

                                                     
Query: 481 aaggtttcctgtgtatcaagagtacacttttcccctcaaatg 522
           |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 307 aaggtttcctgtgtatcaagagcacacttttcccctcaaatg 266


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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