BAC Information

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BAC

Clone NameMSMg01-438C18
Chromosome3 (Build37)
Map Location 134,903,379 - 134,903,936
singlet/doubletsinglet
Overlap geneCenpe
Upstream geneCxxc4, Ppia-ps3_1390.1, LOC100039234, Tacr3, LOC229837, LOC100039290, EG620439
Downstream geneBdh2, C80638, 4933425K02Rik, Zcd2, Ube2d3, Manba, LOC668745, Nfkb1, ENSMUSG00000045520, Slc39a8, LOC100039350, LOC383923, Bank1, LOC100039477
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438C18.T7 (MSMg01no438_c18.b1)MSMg01-438C18.TJ (MSMg01no438_c18.g1)
ACCAG528829AG528830
length838759
length of high quality
(start - end)
114 (34 - 147)559 (70 - 628)
definitionCHROMAT_FILE: MSMg01no438_c18.b1 PHD_FILE: MSMg01no438_c18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:51 2005CHROMAT_FILE: MSMg01no438_c18.g1 PHD_FILE: MSMg01no438_c18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTGCGGCGCTATACGACTCCTATATTCCGAGGATCCGCGGAATTCTCG
GTTTAGTTCTATTCCCGGGTTTTTGATTGGGTTGTTTGGTTTTTTGGGTG
ATTAACTTCTTGAGTTGTTTATATATTTTGGACATTAGCCCTCTATTGGA
TGTGGTATTAGCGAAGTTTTTTCTAATCTGTATGTCTCCTATTTGCCTTA
TTGACCTATGCCCTTTGCCTGACTTATGCCTTCCAATTTCTTGAGTTCGC
CTCAATCTTTTTTTGACGTTCTCTGCTGCTCTACTCTCCTTCTGTAGACA
ATCTTCCCCCTTGTGTTCTTGTTTTTACCGCTCTTACTCACTCTCTCTCT
ATCTAAAATCTCTACCTAAGAATCTACGTTCCCTTTTACTCGATCTCTCT
TCCTTTCTTCATTCTCCTCCCCACCTCTTTTCCCCTCTTCTCTTTTATTT
ACACCCTCACTTTCATTTCCCCTTTCCCCTAATTTCACTCTCTCTCACCT
CTGTATTATTCTTCTCTACATTCTTTCAGCTTCACTTCCCAACTTAATCC
CCACATTCTACTTAACTCCCTCAATTCTTTCCTTTACTTTCATACTTTCT
CTTTTCTCTCACTTTTTCTCTCTGTCCCTATCACCATCCCCTTCACTTAC
TCCCTAAACACTTACTCAATCTAGATAAACTTAACAAACTTCCTTTCTAT
CTTCACTTTTTCATCCCGTTCCCCTCTTTCCTCCTTCACCCTCCCCCCCT
TTATCCTTTATACCCTCTCCCCTCCCTCATCTCCACATCCATCACTCTCT
CATACTATTCCGTTCTTACTCTCATTCTCACGTCCACT
GCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTAACTCTTCCTGGTTTTCAATACTCTAGAG
TTAAAAAAAATACTCAGAAATGACTTTTGACTCAAAAATGAAGAAATCCA
AGTGCAACTACAGAGCAAAAGGCAGCTGTACAGAGATGTCAGTATGCTGT
CAGTGGCCAAAGAGACTAAAGCCACATTTTTCCTCTGAAGCTTTCATGAC
TGGATTCAAGCACTGATCAATGATGGTTCCCACTCTTTTCTGGCAGATGT
GGTTTAATTCATTATTAAGATCATATAGCACCATGCTTGTATATGAAGGT
CAACAAAACATATCAAATTAGGGAAAGAATATACTTTGTGTTTGCATGTT
AATTTTCATTCAGTTTGCTGATAAACCAGACAATCCTAAATATAGAAAAT
TAAAATAGCATAAAGTGTCAGGTGGTATCGTATCCACAGTGAATTTCCAA
AATTATTAATTTCAACCCATACAGATTTATAGGGCCTTGTAACAAATACA
AAACTGAGCCAGATATGGGAATACTGACAGACATCAATGATTTAAAACAA
AACTAGAAGCTACTATAGTAAAGAGAAACATTCAGGAACATACTTAACAA
ATTACGTATAATAGCCATCCACTATAACACAACCTTAAGGGATTAAGTCA
CTAGGATTTCCATGGCTACTCAGCTTACAAAACACGCTCCATATCTTCTG
GTTACAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_c18.g1 MSMg01no438_c18.g1 CHROMAT_FILE:
MSMg01no438_c18.g1 PHD_FILE: MSMg01no438_c18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:51 2005
         (559 letters)



>mm_chr3_134903179_134904136
          Length = 958

 Score = 1050 bits (543), Expect = 0.0
 Identities = 555/559 (99%), Gaps = 1/559 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaactcttcctggttttcaatactctagagttaaaaaaaatactcagaaatgacttttg 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 758 ttaactcttcctggttttcaatactctagagtt-aaaaaaatactcagaaatgacttttg 700

                                                                       
Query: 61  actcaaaaatgaagaaatccaagtgcaactacagagcaaaaggcagctgtacagagatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 actcaaaaatgaagaaatccaagtgcaactacagagcaaaaggcagctgtacagagatgt 640

                                                                       
Query: 121 cagtatgctgtcagtggccaaagagactaaagccacatttttcctctgaagctttcatga 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 639 cagtatgctgtcagtggccaaagagactaaagccacatttttcctttgaagctttcatga 580

                                                                       
Query: 181 ctggattcaagcactgatcaatgatggttcccactcttttctggcagatgtggtttaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ctggattcaagcactgatcaatgatggttcccactcttttctggcagatgtggtttaatt 520

                                                                       
Query: 241 cattattaagatcatatagcaccatgcttgtatatgaaggtcaacaaaacatatcaaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 cattattaagatcatatagcaccatgcttgtatatgaaggtcaacaaaacatatcaaatt 460

                                                                       
Query: 301 agggaaagaatatactttgtgtttgcatgttaattttcattcagtttgctgataaaccag 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 459 agggaaagaatatactttgtgtttgcatgttaattttcattcagtttgttgataaaccag 400

                                                                       
Query: 361 acaatcctaaatatagaaaattaaaatagcataaagtgtcaggtggtatcgtatccacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 acaatcctaaatatagaaaattaaaatagcataaagtgtcaggtggtatcgtatccacag 340

                                                                       
Query: 421 tgaatttccaaaattattaatttcaacccatacagatttatagggccttgtaacaaatac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tgaatttccaaaattattaatttcaacccatacagatttatagggccttgtaacaaatac 280

                                                                       
Query: 481 aaaactgagccagatatgggaatactgacagacatcaatgatttaaaacaaaactagaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aaaactgagccagatatgggaatactgacagacatcaatgatttaaaacaaaactagaag 220

                              
Query: 541 ctactatagtaaagagaaa 559
           |||| ||||||||||||||
Sbjct: 219 ctacaatagtaaagagaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 958
Length adjustment: 10
Effective length of query: 549
Effective length of database: 948
Effective search space:   520452
Effective search space used:   520452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)