BAC Information

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BAC

Clone NameMSMg01-438J03
Chromosome3 (Build37)
Map Location 95,148,136 - 95,148,567
singlet/doubletsinglet
Overlap geneSetdb1
Upstream geneThem5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2
Downstream geneLOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438J03.T7 (MSMg01no438_j03.b1)MSMg01-438J03.TJ (MSMg01no438_j03.g1)
ACCAG529133AG529134
length761739
length of high quality
(start - end)		362 (41 - 402)432 (77 - 508)
definitionCHROMAT_FILE: MSMg01no438_j03.b1 PHD_FILE: MSMg01no438_j03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:23 2005CHROMAT_FILE: MSMg01no438_j03.g1 PHD_FILE: MSMg01no438_j03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGA
ATTCAGGACTTCTTTCAGAGCAGTCAGTGCTCTTAACTGCTGAGCTATCA
CTCCAGCCCTTATTATTATATTTTTGAGACAGTTTTTCTGTATAACCCTG
GCTGTCCTAGAGCTTGCTCTGTAGCCTAGGCTGGCCTCAATCTTACAGAG
ATCTATTTGTCTCTGCCTCCATAGTGTTGGAATTACGGATGTTCAACACC
ACCACCTTGCAAAAACATTTTTTTAAAAGATTTGTTTTTATTTTATATGT
ATGGATGTTTTGCCTGCATGTGTGTCTGTGCATCATGCATGTGCAGTGCC
TATGGCAGCCCGAAGACAGTGTGGGATCCCTCTGAAACTGGCTGTTGGCC
AACCAGTATTTATTTTATCCCACCTTCTTAAACTAATATATGTTTAATTA
GAAATTATCACTCCCGTTGTGGTGTAATATATATTTAATCCTGTGATTCC
TTTTTTTGTGTGTCCCTGAATCTGTTGTCAGCCTGTTCTATTTTCTCTGC
TCTTGTTTTGGCTTGGTTTTTTGTTCTAAATCCTTGTCATATTTTACACT
TTTCTTATTTTCTTTTTTTTTTTCTTTTTTTTCTTATTTTATCTTGCTCT
TTTATTTCTCCTCGTTTTTCTGTTTTTTTTATTAGCATTCATCTCTCTTA
TCTTTTTAACTTCTCTCGTTTTTCTTTTAGTGTATTTACGTTGTCGATNC
GACTTTTTTTT

CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGCCCAAGGTTTTGCTCAAGGA
CGTTCTAGGACTGTTGGAACACTGGCTTTAGCTATGTCAGAATTCAATCT
TAAAAGGCACTTATAATAGGACAATACTAAAGGAGAGCACGTGGATCCAT
ACACTAGACTAACTCGGGAATGGAAAATTAATGTATGGGTTAGAGAGAAC
ACCAGAGTCCAGGAGCGAGTTTCCGTGAAACTCTTTTGCCTCGTGAGTGA
GTAGCTTCCAAGCCTCTCGGCTTGTCAAGCTGACTCGATCAGAGCGCGTG
GCAAACACGCAAACATAAAATTTAAAAACTCAAAGACTTTGTCATGTGTT
TATTTCCATGTTAACAATAAGCAATTGATTCTTCTGCAATCACAAATAAT
TGTGGATCTAGGGAGATAGTTCAATGGCAAGTGTGCTTGTGGACTTGAGT
ACGCATCCTCAACACCCATGTTAAAAACAAATGGCCATGTATGCTTATAA
TTCCACATTTAGGGTAGCTACATGTAAATACTCTGGGCAGCTAGCCTAGA
CAAAATTGTATATTTTCTGTTTCTGGGAGAGACCCTATTTTCATGGAATT
AGAATGATAGTGATAGAATAGGAGGCACGCCCTTTTACTTGGTTCCTTTG
GATCTAGTTACCCGTACAACTATTCCCCGGTATTCTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_j03.g1 MSMg01no438_j03.g1 CHROMAT_FILE:
MSMg01no438_j03.g1 PHD_FILE: MSMg01no438_j03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:23 2005
         (432 letters)



>mm_chr3_95147936_95148767
          Length = 832

 Score =  758 bits (392), Expect = 0.0
 Identities = 422/432 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagcccaaggttttgctcaaggacgttctaggactgttggaacactggctttagctatg 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagcccaaggtcttgctcaaggacgttctaggactgttggaacactggctttagctatg 260

                                                                       
Query: 61  tcagaattcaatcttaaaaggcacttataataggacaatactaaaggagagcacgtggat 120
           ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 261 tcagaattcaatcttaaaaggcatttataataggataatactaaaggagagcacgtggat 320

                                                                       
Query: 121 ccatacactagactaactcgggaatggaaaattaatgtatgggttagagagaacaccaga 180
           ||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 321 ccatacattagactaactcgggaatggaaagttaatgtatgggttagagagaacgccaga 380

                                                                       
Query: 181 gtccaggagcgagtttccgtgaaactcttttgcctcgtgagtgagtagcttccaagcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtccaggagcgagtttccgtgaaactcttttgcctcgtgagtgagtagcttccaagcctc 440

                                                                       
Query: 241 tcggcttgtcaagctgactcgatcagagcgcgtggcaaacacgcaaacataaaatttaaa 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 tcggcttgtcaagctgactcgatcagagcgcgtggcaaacatgcaaacataaaatttaaa 500

                                                                       
Query: 301 aactcaaagactttgtcatgtgtttatttccatgttaacaataagcaattgattcttctg 360
           ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 aactcaaagactttgccatgtgtttatttccatgttaacaataagtaattgattcttctg 560

                                                                       
Query: 361 caatcacaaataattgtggatctagggagatagttcaatggcaagtgtgcttgtggactt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caatcacaaataattgtggatctagggagatagttcaatggcaagtgtgcttgtggactt 620

                       
Query: 421 gagtacgcatcc 432
           ||||| ||||||
Sbjct: 621 gagtatgcatcc 632


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space:   348129
Effective search space used:   348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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