Query= MSMg01no438_k18.b1 MSMg01no438_k18.b1 CHROMAT_FILE:
MSMg01no438_k18.b1 PHD_FILE: MSMg01no438_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:32 2005
(440 letters)
>mm_chr3_126993087_126993930
Length = 844
Score = 723 bits (374), Expect = 0.0
Identities = 424/442 (95%), Gaps = 5/442 (1%)
Strand = Plus / Minus
Query: 4 ggaattcctgcagagttgtgagacacagcttctcagggagacatctgagggacatcttcc 63
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 552 ggaattcctgcagagttgtgagacacagtttctcagagagacatctgagggacatcttcc 493
Query: 64 tcatcttcagtctgggcatcatcactgaaggataatgttttt-ttttttt---caagaag 119
||||||||||||||||||||||||||||||||| | ||||| ||||||| |||||||
Sbjct: 492 tcatcttcagtctgggcatcatcactgaaggatgctttttttatttttttctccaagaag 433
Query: 120 catataaaaaatggtatcaccatagaatcaaatataagctggtgccagaagtgggagttg 179
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 catataaaaaatggtattaccatagaatcaaatataagctggtgccagaagtgggagttg 373
Query: 180 atatgaatactagccttggttttgatctacttatccattcctaaccagagagttgggtaa 239
|||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 atattaatactaggcttggctttgatctacttatccattcctaaccagagagttgggtaa 313
Query: 240 ttgtctagatctccagaaatcacatggcatagtattggctacagcactaaagttccctaa 299
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ttgtctagatctccagaaaccacatggcatagtattggctacagcactaaagttccctaa 253
Query: 300 aagccacatcagtgttggggattctgaagatgaaatcttcctgatttcatgactgacaag 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 252 aagccacatcagtgttggggattctgaagatgaaatcttcctgatttcatgactgatgag 193
Query: 360 aacttccggattatgaagagttggcatggtgcagatcaaaagccaagattatctcgattt 419
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 aacttctggattatgaagagttggcatggtgcagatcaaaagccaagattatctcgattt 133
Query: 420 a-ttttagtatggcttgtgtgt 440
| ||||||||||||||||||||
Sbjct: 132 atttttagtatggcttgtgtgt 111
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 844
Length adjustment: 9
Effective length of query: 431
Effective length of database: 835
Effective search space: 359885
Effective search space used: 359885
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no438_k18.g1 MSMg01no438_k18.g1 CHROMAT_FILE:
MSMg01no438_k18.g1 PHD_FILE: MSMg01no438_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:32 2005
(288 letters)
>mm_chr3_126811719_126812406
Length = 688
Score = 472 bits (244), Expect = e-137
Identities = 270/288 (93%), Gaps = 15/288 (5%)
Strand = Plus / Plus
Query: 1 ggacagaattaaaatgaactttaaaaatttgcatatagagaaaatgaactatactgaggt 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 ggacagaattaaaatgaactttaaaattttgcatatagagaaaatgaactatactgaggt 260
Query: 61 tcaaatgcatactcttctctttcttgtatatacacatcgacaaatgcacatgtaaataca 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaaatgcatacttttctctttcttgtatatacacatcgacaaatgcacatgtaaataca 320
Query: 121 tttaagtgcatgtatctacaatggggtcaatctgtgattacagctcttggcaaaacagat 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtaagtgcatgtatctacaatggggtcaatctgtgattacagctcttggcaaaacagat 380
Query: 181 ttagacaacaggagcctagttacttttaatcaataaggagataaaagaggattcaaacat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttagacaacaggagcctagttacttttaatcaataaggagataaaagaggattcaaacat 440
Query: 241 acacacttttctctcacacacacacacacaaacccaaacaaacacacc 288
|||||| |||||||||||||||||||||||||||
Sbjct: 441 acacac---------------acacacacaaacccaaacaaacacacc 473
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
