BAC Information

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BAC

Clone NameMSMg01-439A12
Chromosome3 (Build37)
Map Location 42,710,625 - 42,710,790
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666031, LOC100039204
Downstream geneLOC100039219, LOC677788, LOC100039264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439A12.T7 (MSMg01no439_a12.b1)MSMg01-439A12.TJ (MSMg01no439_a12.g1)
ACCAG529485AG529486
length1,037741
length of high quality
(start - end)
---167 (76 - 242)
definitionCHROMAT_FILE: MSMg01no439_a12.b1 PHD_FILE: MSMg01no439_a12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:02 2005CHROMAT_FILE: MSMg01no439_a12.g1 PHD_FILE: MSMg01no439_a12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTTTTCTGCGTTCGCCTTTATCGACACACTTTATTTCCTCAGTCATCC
GCGTTAATTTCCGGCGCCTTTTTTACTTGTTCGCTCTCCTAGTTTGTTAT
TTGAATATGAGCCCCCTGTTATGTGCACACGACATATATGCTAGTGTTAG
CATCCTACATTTACCGGTATCCCGCGATACACTCATCCTTTATCACGAAG
GGTGTTGTCTGGTTCAACGAGTATCTTTACCGAGGTTTCTTACTTATTAA
TCACCGGCTCAGCGTGATCCTCCCTCTCACCTCGATTACTATCTATGTTC
GTTCCGAACTTATTATTCTCCCTCTGTTCCCGCCTTCTCCTTTCGCCCCC
AGATCCCCCTTTGTTGTTTTATTCTCTCTTCGCTTTTACGCACGTCCCTG
TCTTTCGCCTATCTCCTCATTTATTCAAACTATCCTGCCCCTCTTGGTCA
GTCATCCCACAATGCACCACGTCATACTCGGACTTTTATGATGGTATCGA
CCATTGTAACCTCCCCCTTTTGAACCAACCCCCCGTTTTTACCGTGCCTC
CTCCTCTTCACTTAGCCGACCCTCATCGTTGTGTATATCGTACTTTTTTC
TCCCCTGCACGATTCGCTTTTTTTATTTAGGGCCCCGCTCGCCCGCCTCT
TGCTACTCCTTACCTTTTCTCTCCACACACTGTCACCTACTCGTTTTTTC
TACCTTTCTTATTTTGATCTATTAAACCCTCTTTGGCGCTGTCGCACCTT
TATTTCAGCACTTCACCCCATTATCCTCCTTTTATTTTCCCCCTCTGTTT
TCTCCTTTATCTGTCCAACCGTTATCTCTGTTTGTTTCCTTCCCCCGCTT
ATTCATTTTGTCTCCCACCTTATTCCCTGCCGCCTTCCTCTCGCCGCATT
CTTTCTATCTCTGTCCGCGAGACCTAAATAATAGGCGGCTTGTATATTAT
TTCCTTTATTATACGTTCGCTCGCAATACACCCGTCTTTTTCATTTACAC
TTTTCTTTCCCCTATCTATCTCTTCTCTCCCCTCTCG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTTCAGACATTCAGTTAAATCCACAGAATCCATATAAATA
TTCTGGATGTGTGGGTATGCGGTTTTAATCTCAGCAGTGGGAGGCAGAAG
GGGCTCTCTGATGCTCACTCCCGAACCAATCTCACAGTATTGCCAAGCTC
CCACTAGCAAAGGGTCCTTCCTTCAAAAGCAAAGTAGACTGCTCTGTTTT
TTTACACCTGGAGCTATCTTCTGACCTTCACTAACATGAACACACATATG
TTTTGCAGCACTTTTGTTGTTTTATGGNCCCCATTGGCTCAAACGCTCGA
ACACTTGTTTCCTATCCGATCGAATAGTTTGGGAAAGACTACGAGGTATG
ACCCTGTTAGTGAACGCCTGCCCCTGGGTCGCGCGTTCAGTAGGACAATG
CCGCCCACCGTTCAGCGCCTATCTCACCCCTTGATCTTTCGCTATTCCCA
TTCTTGTTTCAATCCTTCTATATTCTTCCTTCACCCCCTTCCTTTTTCCC
CCTTCGCCTTTTCTTTTCCCTTCCCTTTTCTTTTTTTCCCCCCATTTCTT
CTCTCCCCCATCTTTCCCCTTCCCCCCATTTTCTCCCCCCTTTTACCGCT
TCTTTTTTTTTTCCACCTTCCTTTTCCTTCCTCTTCTCCCTCCTTTTTTC
TCCCCCCTCATCGCTCTCCCTTTTCCATATTTAATCCATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_a12.g1 MSMg01no439_a12.g1 CHROMAT_FILE:
MSMg01no439_a12.g1 PHD_FILE: MSMg01no439_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:02 2005
         (167 letters)



>mm_chr3_42710425_42710991
          Length = 567

 Score =  306 bits (158), Expect = 6e-88
 Identities = 164/166 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaatccacagaatccatataaatattctggatgtgtgggtatgcggttttaatctcagc 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 taaatccacagaatccatataaatattctggatgtgtgggtatgtggttttaatctcagc 260

                                                                       
Query: 61  agtgggaggcagaaggggctctctgatgctcactcccgaaccaatctcacagtattgcca 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 agtgggaggcagaaggggctctctgaggctcactcccgaaccaatctcacagtattgcca 320

                                                         
Query: 121 agctcccactagcaaagggtccttccttcaaaagcaaagtagactg 166
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctcccactagcaaagggtccttccttcaaaagcaaagtagactg 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 567
Length adjustment: 8
Effective length of query: 159
Effective length of database: 559
Effective search space:    88881
Effective search space used:    88881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)