BAC Information

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BAC

Clone NameMSMg01-439C03
Chromosome3 (Build37)
Map Location 50,865,350 - 50,865,750
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039628, LOC639469, Slc7a11, EG621304, LOC100039667
Downstream geneCcrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684, Mgst2, Maml3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439C03.T7 (MSMg01no439_c03.b1)MSMg01-439C03.TJ (MSMg01no439_c03.g1)
ACCAG529563AG529564
length728717
length of high quality
(start - end)
586 (44 - 629)401 (68 - 468)
definitionCHROMAT_FILE: MSMg01no439_c03.b1 PHD_FILE: MSMg01no439_c03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:10 2005CHROMAT_FILE: MSMg01no439_c03.g1 PHD_FILE: MSMg01no439_c03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGTCTTGCCTTCCTTGGTGATAAACAGCAGTATGTAAGTGTAAGCT
GAATAAACCCTTTCCTCCCCAACTTGCTTCTTGGTCATGATGTTTTATAC
AGGAATAGAAACCCTGACTAAGACAAATTGGTACCAGGATTAGGGTATTC
CTGTGACAACCAGACCATGTTTTTGGGAGGACTGTGGAAGGACTTTGGAA
CTTTGAGCTAGAAGATGAAGGCCTGACTTGTGAAATTTCAGAGGGAAGGT
TAAAGACTCTTTTCAGGTCCATTGCTATTTTGGATTGTGAAGATTCTGTG
GTTCTGGTTAGCTGGGGCTGAAGAATCAGCTGTGATTAACAAGATACCAG
AACTATTAAAGCAAAACCTTTGCATTACTGGGACTATTGATGCTGGTTAG
CTGGAGCTAAGAAATTAGCGGTGATTAAGAAGAGACCAGCATCATTGAGG
TGACATCTTCTGGGAAGTGTTTTCTGAAAGCACAGAGGCTGTGTTCCAGA
GATAGCCAAGGTTGTACCTTGTGCTGCAGCAAAACTTGGTAATATGTAAG
AGTCACCCAGGTGGTACTGGTTTTGAAGGCATGAAGGGGTCTTGCATATC
AGCTGATGCTCGGCACTGTGAGAGGCCCTGGAAGGCCATTGGTGAATGTG
CAGCCCTCATTGCATTTGATGGCCCATG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTAGGAGATGGTAAGCTTTGTTCTTGGTGGGGAG
TGCCAGGGGGCACCATCTCAAGCCTCTTGGTAGAAGGACCATCCTGGATT
TGCTTCAAGGCGAATACTCACCCTTCTTCATTCTGCAAAACCTTGTTAAT
CTGGTGCTCCTTAACAGAATTCCACCGAGCTTCTAGAAGACAAGGGCTGG
ATGGATAATGGGCTTCGGAGGGAATTATCTATGAAGAAGGGGAGCACACC
TGTAAGAAATGTTTATGAAATTTTGGTTCTTTCTCACTTCAGAACTATAT
GTGGGTGGTCTGACCATACTGTAGTCACAGATAGAGGTGATGAGGAGGGA
CACAGGGGAAAGGAATGATTTTCTCTCCCTGAATTCTTACGTTAATGATA
TCAAAACATTGAATGCTACATGGTACAGTCCTTCAGCTGCCATGATTTGC
ATGAGCTTTCTTACAATATTCATGGCTTTCCACTCATATATTCTGTGCCA
TGTCTCTGATGTATTATAGACATTCTGTATATAACCTGTCCCCGTCTTTA
TGTCCTGCCCTTTCCTTAACATACCTTGCCACATATATCCCCTCCCTCTT
CTGTTGGCCTCCCTTACATATTGTGACTTTGTTTGCTCTTGGTCTTTGTT
ATGCCCCCCAATTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_c03.g1 MSMg01no439_c03.g1 CHROMAT_FILE:
MSMg01no439_c03.g1 PHD_FILE: MSMg01no439_c03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:10 2005
         (401 letters)



>mm_chr3_50865150_50865950
          Length = 801

 Score =  706 bits (365), Expect = 0.0
 Identities = 392/401 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   taggagatggtaagctttgttcttggtggggagtgccagggggcaccatctcaagcctct 60
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 taggagacagtaagctttgttcttggtggggagtgccagggggcaccatctcaagcctct 542

                                                                       
Query: 61  tggtagaaggaccatcctggatttgcttcaaggcgaatactcacccttcttcattctgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tggtagaaggaccatcctggatttgcttcaaggcgaatactcacccttcttcattctgca 482

                                                                       
Query: 121 aaaccttgttaatctggtgctccttaacagaattccaccgagcttctagaagacaagggc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 481 aaaccttgttaatctggtgctccttaacagaattccaccgagcttctagaaggcaagggc 422

                                                                       
Query: 181 tggatggataatgggcttcggagggaattatctatgaagaaggggagcacacctgtaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tggatggataatgggcttcggagggaattatctatgaagaaggggagcacacctgtaaga 362

                                                                       
Query: 241 aatgtttatgaaattttggttctttctcacttcagaactatatgtgggtggtctgaccat 300
           ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aatgcacatgaaattttggttctttctcacttcagaactatatgtgggtggtctgaccat 302

                                                                       
Query: 301 actgtagtcacagatagaggtgatgaggagggacacaggggaaaggaatgattttctctc 360
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 actgtagtcacagatacaggtgatgaggagggacacaggggaaaggaatgattttctctc 242

                                                    
Query: 361 cctgaattcttacgttaatgatatcaaaacattgaatgcta 401
           ||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 241 cctgaattcttacgttaatgacatcaaaatattgaatgcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space:   310464
Effective search space used:   310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)