BAC Information

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BAC

Clone NameMSMg01-439C13
Chromosome3 (Build37)
Map Location 144,976,488 - 144,976,637
singlet/doubletsinglet
Overlap geneCol24a1
Upstream geneLOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l
Downstream gene2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439C13.T7 (MSMg01no439_c13.b1)MSMg01-439C13.TJ (MSMg01no439_c13.g1)
ACCAG529582AG529583
length1,607734
length of high quality
(start - end)
---150 (322 - 471)
definitionCHROMAT_FILE: MSMg01no439_c13.b1 PHD_FILE: MSMg01no439_c13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:12 2005CHROMAT_FILE: MSMg01no439_c13.g1 PHD_FILE: MSMg01no439_c13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATAGAACATCCGTCTAGTTCGCCGCGCCGCCTCGCGCCGTGACGTGCC
GCTGAGTTCTCCTCTCGAGAAACGACGCGCTGTTAGGGTCATTCTCTCCT
CTTCTATCTCTCTTCTCCCGGCTGAGAGTCCGTTTGGCGTGAGCTGATNC
CGCGGCTTACTTAGCGCGCGCCCGAGTTCACTCACCGTCTGATACGCGCC
AGGTGTTGTATAGTATATATGAGANAGATACGCGACTAGGACCCGTCGAG
ACTAATAGTGTGAGAGGAAGTTGTTGTACTCATACTCGGTCTCACTCCGC
AATCTAGCGTAGTACATGCGCAATCTCGCCCGCTCGCTACGGCTATGATC
TATGTGTTACCCCCCTCATAGTACGTCCCTCGTCTACCGTCGCGACCACG
TAGGAATCGTCGTTATACTGCGTGGTGCTTATTTATTTTCGTATAAGGCT
CGACGTAGAGCCCGCGCCCGCCGTGGCCGTTCATCACCTGCTGTTTCTGT
CCTCTGTGCATGGCTGCGATACTCATCTCATCGGCCTGCATCACGATTCT
GTCCCGCCCGCCGTATACCCAATACGCATATCTTCCCGGCTCTCACTTCT
TCATCTGGCTGACACCGCCCCTATCATTTTTTATTATATATCTTAGGCCT
CCTGTGCGCTACGAGCACATTCGCTCCGCCTCTAGTGGCTGTGTTGAGGG
ACGTACAATTAGTACTCAGACATGCTCAACAGCTGGACTGTCTGGTCCAC
AACAACACACATGTATTTATAGTAGTTCGTTATGTCTCTTCTGTCACATC
TTTCTTCTCTGCTTGTCGAGTTATCTTATCTCGTAATGTTCTCACGCATC
TGCTGACGTGACGCCACCACGTCTTCGGATATTATCACGAGTTCAGGTTG
NTGTCTAGGCTACTCCACAACTTGGACACACGGTGCTGTTAGCGGCGGAT
ATAATGCACGCGGCATGCGCATATTATCTGATGTTCGCGCGATATCTCTG
CGCCCGTNCAGCGCGAGCGCCCCGATCTCGCNAATCTATTTTTGTCCGCG
CTATATGTTAGTCGACGAAACGCGCGGGTGNCGTGTGTTAGTACATCAAC
GACGCCTCACGCATAGCGACTGCCGCGCTATACACGTGTTCCTTGATCAC
ACTACTTGCGCGCGGCGTCTATATATGTATCGTGCTCCTGTCTCTGTCCG
ATCGATCACTCCTCGCGGTCATTGACGAGCCGCGCCGCCCGCCGATCTCA
CCATCCGACTATTCGCGTGTGTAGCCCTGTCTCGCGCGTGGCGACGCGCG
TGGCCATTCTTCTACCACGTCGCTATCACGCGCGCGCAGCTCGTAAAATA
AAGTATCTCGCTGGCGCGGGATGCGCATTGATATACCCACCGACCACGCT
CTGCGTCCGCTCTACTATCGAATATATTATCCTCTGCTCACTAGTATCTC
TCTCGCACATCATGTAGCACGCCGGCTTGTCGCAGTATCCCGTATGCGTT
TTCGCACACGAGTCACATATATACTGTTAGTAGTCAGTACCTCTCACCTT
CCCGCACGACATATTGCCGTGCGCGGCGCGCGGGACCCACATAATCACTG
ACTACTG
GCAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTTCCCTCATTCCTCAAGGATTCGGAAAGT
AACCAAGGTGCTTTAAGTGTGGTATATTATTAAGGTTTTAGGTACAGAAT
GCTGAGATTAAATTCCAAGAAGTTTGGAAAATTAGAATGTAAGTGCGGGT
GTGAAATTATAAAGAGGATTATGAGTTACACATTGCTGTTGTCAACGGAC
TCTGTTTCACCTGAACATGGATGTCAGTAAATGTTCAGGTGTAAGTTCAG
GATGTGAGTGACANTTCATAAGTTGTGAATGTATGTTTATAGTGGAGTGG
CAAGAATCCTAATAACATGAGAAAAATCAAAAGAGCTCAACTGATTTTAA
ATTATTTGGAGGTCTAAAAGACAGTAATGTGTGTGTGTGTGTGTGTGCAC
ATGCATGTGTGTTTGTATGTGCGTATGTGTGCATGAGTATCTGTTTGTAC
CTGTGTATGTATATGTGTGCGTTCTCTCTTGCGCATATATGTGTATTATT
TATGTGTGTTCCTCGTGCATTTTTGTGTATATGTGCATGTTTGCGTGCCC
CCGCGTATGTGTCCTTTTCTGTTCTTTCCCCTTTACCTTTTTTTTTTTTT
TTCTTTCCTTTTTTTTTTGTCCTCTTTATCTTGTTATCGCCTTTTTACAT
GATTACTCTTTTTCTGTACCTCCCCCTCTTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_c13.g1 MSMg01no439_c13.g1 CHROMAT_FILE:
MSMg01no439_c13.g1 PHD_FILE: MSMg01no439_c13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:12 2005
         (150 letters)



>mm_chr3_144976288_144976837
          Length = 550

 Score =  290 bits (150), Expect = 2e-83
 Identities = 150/150 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgtgaatgtatgtttatagtggagtggcaagaatcctaataacatgagaaaaatcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttgtgaatgtatgtttatagtggagtggcaagaatcctaataacatgagaaaaatcaaa 260

                                                                       
Query: 61  agagctcaactgattttaaattatttggaggtctaaaagacagtaatgtgtgtgtgtgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagctcaactgattttaaattatttggaggtctaaaagacagtaatgtgtgtgtgtgtg 320

                                         
Query: 121 tgtgtgcacatgcatgtgtgtttgtatgtg 150
           ||||||||||||||||||||||||||||||
Sbjct: 321 tgtgtgcacatgcatgtgtgtttgtatgtg 350


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 150
Length of database: 550
Length adjustment: 8
Effective length of query: 142
Effective length of database: 542
Effective search space:    76964
Effective search space used:    76964
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)