Query= MSMg01no439_e16.b1 MSMg01no439_e16.b1 CHROMAT_FILE:
MSMg01no439_e16.b1 PHD_FILE: MSMg01no439_e16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:22 2005
(518 letters)
>mm_chr3_82046921_82047837
Length = 917
Score = 909 bits (470), Expect = 0.0
Identities = 503/516 (97%), Gaps = 5/516 (0%)
Strand = Plus / Minus
Query: 5 gaattcagcacgttcctcccttctgccttcctgtgaacctgtgccccagtgggtatagtc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 gaattcagcacgttcctcccttctgccttcctgtgaacctgtgccccagtgggtatagtc 658
Query: 65 atttaattgcttggatgataaacgagagtccctttcccctctcatctgctactcagagag 124
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 657 atttaattgcttggatgataaatgagagtccctttcccctctcatctgctactcagagag 598
Query: 125 acagttctctaacaaagcttttcaacacttaaatcttttgttgaatatgttcttaaataa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 acagttctctaacaaagcttttcaacacttaaatcttttgttgaatatgttcttaaataa 538
Query: 185 tggtttctctcttttaacctatccatttaaagttgataatccaactgatggatttgtgac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 537 tggtttctctcttttaacctatccatttaaagttgataatccaactgatggatttatgac 478
Query: 245 aagctaggcctctttttctggatgcctctgc--tttaggctatgttttagaagttgatta 302
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 477 aagctaggcctctttttctggatgcctctgcaa---aggctatgttttagaagttgatta 421
Query: 303 gaaagacaatctaatgtccccttcaaacctcagtagatatatgcatgtgttacatttttg 362
|||||||||||||| ||||||||||||||||||||||| || |||||||||||| |||||
Sbjct: 420 gaaagacaatctaacgtccccttcaaacctcagtagatgtaggcatgtgttacacttttg 361
Query: 363 gagtttctctatgttgatgctttgttgataataaatgcaagacactgtgccccattggaa 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 cagtttctctatgttgatgctttgttgataataaatgcaagacactgtgccccattggaa 301
Query: 423 agcagaaagaccagcccttacatcctcagggattgtttgctttaacatgttctaggtatt 482
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 300 agcagaaagaccagcccttacatactcagggattgtttgctttaacatgttctaggtatt 241
Query: 483 taatgtactttacatgtattataatttcacaggtac 518
||||||||||||||||||||||||||||||||||||
Sbjct: 240 taatgtactttacatgtattataatttcacaggtac 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 917
Length adjustment: 10
Effective length of query: 508
Effective length of database: 907
Effective search space: 460756
Effective search space used: 460756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no439_e16.g1 MSMg01no439_e16.g1 CHROMAT_FILE:
MSMg01no439_e16.g1 PHD_FILE: MSMg01no439_e16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:22 2005
(486 letters)
>mm_chr3_81883919_81884801
Length = 883
Score = 874 bits (452), Expect = 0.0
Identities = 477/486 (98%), Gaps = 3/486 (0%)
Strand = Plus / Plus
Query: 1 attggctattaaacattctccatgagagagaaattcatgaaggagacaagagaatgatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attggctattaaacattctccatgagagagaaattcatgaaggagacaagagaatgatat 260
Query: 61 tcacagaagtcctgctctttggcaactgtgaatcttatgaaacactaatttcttcttcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcacagaagtcctgctctttggcaactgtgaatcttatgaaacactaatttcttcttcta 320
Query: 121 acataaggaaatcaagggtattcaatgtaacaatattttaaaggacatatagtgctttac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acataaggaaatcaagggtattcaatgtaacaatattttaaaggacatatagtgctttac 380
Query: 181 atgtagcaaactcttatcaattgtgagcttcataatccatttaagtattgtgtttgttaa 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtagcaaactcttatcaattgggagcttcataatccatttaagtattgtgtttgttaa 440
Query: 241 aatattcaaataattcttattcacacatgttccatttgagttaaaaacaatgcacttaaa 300
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aa-atacaaataattcttattcacacatgttccatttgagttaaaaacaatgcacttaaa 499
Query: 301 cctcataccagcattacagagtacataagccggattcatcatccctttccttattctcga 360
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 500 cctcataccagcattacagcgtacataagccggattcatcatcccttcccttattctcga 559
Query: 361 tggagctcaggaagcagtagccaacgtcaacagaacaaagtgggcccagatgtgtgtgat 420
||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 560 tggagctcaagaagcagtagccaatgtcaacagaaca--gtgggcccagatgtgtgtgat 617
Query: 421 tccattaatccatgtgaaacaaagttagtccactctggggtctgtcttaattcattatct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tccattaatccatgtgaaacaaagttagtccactctggggtctgtcttaattcattatct 677
Query: 481 tctaaa 486
||||||
Sbjct: 678 tctaaa 683
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 883
Length adjustment: 10
Effective length of query: 476
Effective length of database: 873
Effective search space: 415548
Effective search space used: 415548
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
