BAC Information

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BAC

Clone NameMSMg01-439F11
Chromosome3 (Build37)
Map Location 80,576,753 - 80,577,280
singlet/doubletsinglet
Overlap geneGria2
Upstream geneTmem144, 1110032E23Rik, EG626797
Downstream geneGlrb, EG626841, Pdgfc, LOC229443
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439F11.T7 (MSMg01no439_f11.b1)MSMg01-439F11.TJ (MSMg01no439_f11.g1)
ACCAG529718AG529719
length736805
length of high quality
(start - end)
530 (69 - 598)32 (61 - 92)
definitionCHROMAT_FILE: MSMg01no439_f11.b1 PHD_FILE: MSMg01no439_f11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:26 2005CHROMAT_FILE: MSMg01no439_f11.g1 PHD_FILE: MSMg01no439_f11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAGAGGATCCGCGGAAT
TCAAAGCATTCCTTTAAGGTTATGGAAGTCCAATTCCAAGACAGATCTTG
CTCTTATAAGTGACATTAGAGAATAAGATTCCAAGGCTAGAAGCACTCTG
CCAGCAGGTTCTTGATTCAAAGGTGCTAAAGAATAAAAACCACCTGGACA
ACTTACATTTTCATTCTACAGGCACCCTTGTATTTCGGTATTCAGAAAAT
GTGATTAGTGATATTTTAAATAATGTAAATAGTAGCAGGATATAAGAGGT
CATTAAAATACAGTAAAAAAATACAGTACCCCTGCTGTTCACAACATTCT
CTAATATCAAAAAAATTATTTAGTGCTGTGCTAATTTCCCTCTTCACTCA
GTGAATTATGCATCAATTCAGTGAATTTGTTAACCTACATCTAACTTTTA
AAAATAATGCAAGGCCACAGTTCTTAATAGTCTTTGTATTTCTATTCCTT
CATCAATATCTATCCATTTGCAAGGATTTAGATATGTCTCTTGTCTGTTT
TTAACACATATCACTACTAAAATAGCTGACTATATTTCACTTTCGCATAG
CTGTGAGTTAAGTTCGCAACCGGGAGTGCCTAACTCACTCCAGTGCTGAC
ATCCAAGAGTTGGATGCCCAGCCCTAGATGCAANACCTCTATTGACTCCC
CAGTACTAATACTCCCCTAAACCTGCAAACGAAGTC
ACTGGTAGCCTGNNGNCGCCTTTTCATAATTTTAGTGACCTATANAATGA
CAAAAAAATTCCTTTTCTGTTCAGTCTATTTGGAGTTCTGTANNTTTCTT
TATGTTATAGNCATCTCTTTCTTTANATTTGNNAAGTTTTTTTTATAATG
TTGTTANAGATGTTTATTAAAATTAGAAAGAGAAAAGGAGAAGAGAGTGA
ATTNNNATTATTNNAANTTNGNNCTTTTTTTTTNGNCCNGGATTTCCTGA
AAATTTTATTAATATTTTTTTGAGTGAAGAGTAGTNTTNTTAACTTTTTT
NGNAGGGGGGTGAGGGGGGGGGGNNNCTTNNAAATTTTTTTTTTTCCCCT
CCCCCTTAATTTTTTTTTTTTTTCCTCAATTTTATTTTCCTAAATATTTT
TTTTTTATTTTTTTTTTTTTTCTCCTTTTTCCCCCTCCTCTATCTTTTTT
TTTTTTTCCACCTTTTTTTTTTTTTTTTTTTCTTTCTTTTTTTTTTTTTT
CCATTACCCCTTTTTTCATCCCTTATTTTCCCCCTTTTCCCCTCCTTTCT
TCTTTTCCTATAATTTCTCCCTTTTTCCTTTTTTTTTATAATATTTTTAA
CCTTTCAAATTTTTTTTTCCTTTCCCCACNTCTTTTTTTTTTTTTTTANT
CACNACAATTTTTATTAAATTATTTCTTTCTTTTTTTTTTTCATTTCCTT
TTTATTTTATTTTTTTTTTTTCTATAATTTCTTCCTCTTTTTTTCTTCTT
TTTTTTTTATCCCTCCTTTTTTTTATCTCTACATTTTTTTATTACATTTT
TTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_f11.b1 MSMg01no439_f11.b1 CHROMAT_FILE:
MSMg01no439_f11.b1 PHD_FILE: MSMg01no439_f11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:26 2005
         (530 letters)



>mm_chr3_80576553_80577480
          Length = 928

 Score =  994 bits (514), Expect = 0.0
 Identities = 526/530 (99%), Gaps = 2/530 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttatggaagtccaattccaagacagatcttgctcttataagtgacattagagaataaga 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 gttatggaagtccaattccaagacagatcttgctcttatgagtgacattagagaataaga 260

                                                                       
Query: 61  ttccaaggctagaagcactctgccagcaggttcttgattcaaaggtgctaaagaataaaa 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 ttccaaggctagaagcactctgccagcaggttcttgattcaaaagtgctaaagaataaaa 320

                                                                       
Query: 121 accacctggacaacttacattttcattctacaggcacccttgtatttcggtattcagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accacctggacaacttacattttcattctacaggcacccttgtatttcggtattcagaaa 380

                                                                       
Query: 181 atgtgattagtgatattttaaataatgtaaatagtagcaggatataagaggtcattaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtgattagtgatattttaaataatgtaaatagtagcaggatataagaggtcattaaaa 440

                                                                       
Query: 241 tacagtaaaaaaatacagtacccctgctgttcacaacattctctaatatcaaaaaaatta 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacagtaaaaaa-tacagtacccctgctgttcacaacattctctaatatcaaaaaaatta 499

                                                                       
Query: 301 tttagtgctgtgctaatttccctcttcactcagtgaattatgcatcaattcagtgaattt 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tttagtgctgtgctaatttcc-tcttcactcagtgaattatgcatcaattcagtgaattt 558

                                                                       
Query: 361 gttaacctacatctaacttttaaaaataatgcaaggccacagttcttaatagtctttgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gttaacctacatctaacttttaaaaataatgcaaggccacagttcttaatagtctttgta 618

                                                                       
Query: 421 tttctattccttcatcaatatctatccatttgcaaggatttagatatgtctcttgtctgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tttctattccttcatcaatatctatccatttgcaaggatttagatatgtctcttgtctgt 678

                                                             
Query: 481 ttttaacacatatcactactaaaatagctgactatatttcactttcgcat 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ttttaacacatatcactactaaaatagctgactatatttcactttcgcat 728


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 928
Length adjustment: 10
Effective length of query: 520
Effective length of database: 918
Effective search space:   477360
Effective search space used:   477360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)